RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 DLK1P80370 383 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 PRSS8Q16651 343 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 RUSC1-AS1Q66K80 236 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 BRD3OSQ6XYD6 125 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 IL34Q6ZMJ4 242 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 CENPVQ7Z7K6 275 aaPredicted RBP11.35□□□□□ -0.59
CUX1-209ENST00000487284 PIP4P2Q8N4L2 257 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 MARC2Q969Z3 335 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 RSG1Q9BU20 258 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 SIGLEC9Q9Y336 463 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 ANK3Q12955 4377 aaKnown RBP11.35□□□□□ -0.59
CUX1-209ENST00000487284 MXRA5Q9NR99 2828 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 IGHV1-69DA0A0B4J2H0 117 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 A0A1W2PN81 502 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 E7EUB6 86 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 I3L521 148 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 NPFFO15130 113 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 CA2P00918 260 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 IGHV1-69P01742 117 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 PRH1P02810 166 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 PAX6P26367 422 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 MAS1LP35410 378 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 SAA4P35542 130 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 CHRNA7P36544 502 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 LGALS4P56470 323 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 SERF2P84101 59 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 PJVKQ0ZLH3 352 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 C2orf83Q53S99 150 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 TOR2AQ5JU69 321 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 DPPA3Q6W0C5 159 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 DYNAPQ8N1N2 210 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 OR10W1Q8NGF6 305 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 C17orf50Q8WW18 174 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 SMR3AQ99954 134 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 WDR83OSQ9Y284 106 aa11.34□□□□□ -0.59
CUX1-209ENST00000487284 A0A1B0GW64 132 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 MOSP00540 346 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 IFNA4P05014 189 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 RNASE2P10153 161 aaKnown RBP11.33□□□□□ -0.6
CUX1-209ENST00000487284 FHITP49789 147 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 SSX2Q16385 188 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 C10orf55Q5SWW7 151 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 PPP1R27Q86WC6 154 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 FAM213BQ8TBF2 198 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 AJUBAQ96IF1 538 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 TMUB1Q9BVT8 246 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 HRH4Q9H3N8 390 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 METTL1Q9UBP6 276 aaKnown RBP11.33□□□□□ -0.6
CUX1-209ENST00000487284 FBXO7Q9Y3I1 522 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 ZFHX3Q15911 3703 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 FNDC10F2Z333 226 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 FSHBP01225 129 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 IGKV1D-33P01593 117 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 IGKV1-33P01594 117 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 FGF7P21781 194 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 ZNF616Q08AN1 781 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 AKR1C8PQ5T2L2 129 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 UQCC3Q6UW78 93 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 NPBQ8NG41 125 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 MALSU1Q96EH3 234 aa11.33□□□□□ -0.6
CUX1-209ENST00000487284 EAF1Q96JC9 268 aaPredicted RBP11.33□□□□□ -0.6
CUX1-209ENST00000487284 NDUFA3O95167 84 aa11.32□□□□□ -0.6
CUX1-209ENST00000487284 CD99P14209 185 aa11.32□□□□□ -0.6
CUX1-209ENST00000487284 RPL27AP46776 148 aaKnown RBP11.32□□□□□ -0.6
CUX1-209ENST00000487284 COMPP49747 757 aaPredicted RBP11.32□□□□□ -0.6
CUX1-209ENST00000487284 ERHP84090 104 aaKnown RBP11.32□□□□□ -0.6
CUX1-209ENST00000487284 WT1-ASQ06250 92 aa11.32□□□□□ -0.6
CUX1-209ENST00000487284 EBI3Q14213 229 aa11.32□□□□□ -0.6
CUX1-209ENST00000487284 TUSC1Q2TAM9 212 aa11.32□□□□□ -0.6
CUX1-209ENST00000487284 Q8N6K4 173 aa11.32□□□□□ -0.6
CUX1-209ENST00000487284 OR2T10Q8NGZ9 312 aa11.32□□□□□ -0.6
CUX1-209ENST00000487284 FBXL15Q9H469 300 aa11.32□□□□□ -0.6
CUX1-209ENST00000487284 YAE1D1Q9NRH1 226 aa11.32□□□□□ -0.6
CUX1-209ENST00000487284 SOX21Q9Y651 276 aaPredicted RBP11.32□□□□□ -0.6
CUX1-209ENST00000487284 IGLC7A0M8Q6 106 aa11.31□□□□□ -0.6
CUX1-209ENST00000487284 NBR2O15453 112 aa11.31□□□□□ -0.6
CUX1-209ENST00000487284 MPDU1O75352 247 aa11.31□□□□□ -0.6
CUX1-209ENST00000487284 SNRNP70P08621 437 aaKnown RBP11.31□□□□□ -0.6
CUX1-209ENST00000487284 SNCAP37840 140 aa11.31□□□□□ -0.6
CUX1-209ENST00000487284 SSBP2P81877 361 aaPredicted RBP11.31□□□□□ -0.6
CUX1-209ENST00000487284 MMDQ15546 238 aa11.31□□□□□ -0.6
CUX1-209ENST00000487284 TNXAQ16473 311 aa11.31□□□□□ -0.6
CUX1-209ENST00000487284 TREML4Q6UXN2 200 aa11.31□□□□□ -0.6
CUX1-209ENST00000487284 IL17RELQ6ZVW7 336 aa11.31□□□□□ -0.6
CUX1-209ENST00000487284 MRPL41Q8IXM3 137 aaKnown RBP11.31□□□□□ -0.6
CUX1-209ENST00000487284 COMMD1Q8N668 190 aa11.31□□□□□ -0.6
CUX1-209ENST00000487284 NPCDR1Q9BY65 106 aa11.31□□□□□ -0.6
CUX1-209ENST00000487284 MTORP42345 2549 aa11.3□□□□□ -0.6
CUX1-209ENST00000487284 A0A0U1RQK1 487 aa11.3□□□□□ -0.6
CUX1-209ENST00000487284 ACTL6BO94805 426 aa11.3□□□□□ -0.6
CUX1-209ENST00000487284 TSPAN15O95858 294 aa11.3□□□□□ -0.6
CUX1-209ENST00000487284 LY6G6DO95868 133 aa11.3□□□□□ -0.6
CUX1-209ENST00000487284 ZP3P21754 424 aa11.3□□□□□ -0.6
CUX1-209ENST00000487284 ARSJQ5FYB0 599 aaPredicted RBP11.3□□□□□ -0.6
CUX1-209ENST00000487284 FAM120AOSQ5T036 256 aa11.3□□□□□ -0.6
CUX1-209ENST00000487284 NANPQ8TBE9 248 aa11.3□□□□□ -0.6
CUX1-209ENST00000487284 RPRMQ9NS64 109 aa11.3□□□□□ -0.6
CUX1-209ENST00000487284 F8P00451 2351 aa11.3□□□□□ -0.6
CUX1-209ENST00000487284 KRBOX1C9JBD0 128 aa11.29□□□□□ -0.6
CUX1-209ENST00000487284 OR13C7P0DN81 318 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms