RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 NDUFA4O00483 81 aa13.13□□□□□ -0.31
COL7A1-206ENST00000466591 ZNF207O43670 478 aaKnown RBP13.13□□□□□ -0.31
COL7A1-206ENST00000466591 NAT1P18440 290 aa13.13□□□□□ -0.31
COL7A1-206ENST00000466591 VBP1P61758 197 aa13.13□□□□□ -0.31
COL7A1-206ENST00000466591 NCS1P62166 190 aa13.13□□□□□ -0.31
COL7A1-206ENST00000466591 RELQ04864 619 aaPredicted RBP13.13□□□□□ -0.31
COL7A1-206ENST00000466591 RNASE12Q5GAN4 147 aaKnown RBP13.13□□□□□ -0.31
COL7A1-206ENST00000466591 SCARB1Q8WTV0 552 aa13.13□□□□□ -0.31
COL7A1-206ENST00000466591 AP3S1Q92572 193 aa13.13□□□□□ -0.31
COL7A1-206ENST00000466591 ZNF436Q9C0F3 470 aaPredicted RBP13.13□□□□□ -0.31
COL7A1-206ENST00000466591 ANAPC10Q9UM13 185 aa13.13□□□□□ -0.31
COL7A1-206ENST00000466591 IGHV3OR16-8A0A075B7F1 116 aa13.12□□□□□ -0.31
COL7A1-206ENST00000466591 OR4C46A6NHA9 309 aa13.12□□□□□ -0.31
COL7A1-206ENST00000466591 C15orf61A6NNL5 157 aa13.12□□□□□ -0.31
COL7A1-206ENST00000466591 RORCP51449 518 aa13.12□□□□□ -0.31
COL7A1-206ENST00000466591 RNASE11Q8TAA1 199 aaKnown RBP13.12□□□□□ -0.31
COL7A1-206ENST00000466591 GPX8Q8TED1 209 aa13.12□□□□□ -0.31
COL7A1-206ENST00000466591 PINX1Q96BK5 328 aaKnown RBP13.12□□□□□ -0.31
COL7A1-206ENST00000466591 CMTM3Q96MX0 182 aa13.12□□□□□ -0.31
COL7A1-206ENST00000466591 PDCD10Q9BUL8 212 aa13.12□□□□□ -0.31
COL7A1-206ENST00000466591 FUNDC2Q9BWH2 189 aa13.12□□□□□ -0.31
COL7A1-206ENST00000466591 C6orf62Q9GZU0 229 aaPredicted RBP13.12□□□□□ -0.31
COL7A1-206ENST00000466591 HPGDSO60760 199 aa13.11□□□□□ -0.31
COL7A1-206ENST00000466591 C8orf88P0DMB2 117 aa13.11□□□□□ -0.31
COL7A1-206ENST00000466591 AKR1C2P52895 323 aa13.11□□□□□ -0.31
COL7A1-206ENST00000466591 MFAP4P55083 255 aa13.11□□□□□ -0.31
COL7A1-206ENST00000466591 ERHP84090 104 aaKnown RBP13.11□□□□□ -0.31
COL7A1-206ENST00000466591 CXorf65A6NEN9 183 aa13.1□□□□□ -0.31
COL7A1-206ENST00000466591 GNG7O60262 68 aa13.1□□□□□ -0.31
COL7A1-206ENST00000466591 ATG12O94817 140 aa13.1□□□□□ -0.31
COL7A1-206ENST00000466591 RNASE10Q5GAN6 216 aaKnown RBP13.1□□□□□ -0.31
COL7A1-206ENST00000466591 LYSMD2Q8IV50 215 aa13.1□□□□□ -0.31
COL7A1-206ENST00000466591 STPG3Q8N7X2 389 aa13.1□□□□□ -0.31
COL7A1-206ENST00000466591 OR1P1Q8NH06 330 aa13.1□□□□□ -0.31
COL7A1-206ENST00000466591 MRGPRFQ96AM1 343 aa13.1□□□□□ -0.31
COL7A1-206ENST00000466591 ATP6V0BQ99437 205 aa13.1□□□□□ -0.31
COL7A1-206ENST00000466591 M0QYG6 137 aa13.09□□□□□ -0.31
COL7A1-206ENST00000466591 TSPAN4O14817 238 aa13.09□□□□□ -0.31
COL7A1-206ENST00000466591 ELK1P19419 428 aa13.09□□□□□ -0.31
COL7A1-206ENST00000466591 BMI1P35226 326 aa13.09□□□□□ -0.31
COL7A1-206ENST00000466591 SNCAP37840 140 aa13.09□□□□□ -0.31
COL7A1-206ENST00000466591 PMS2P11Q13670 270 aa13.09□□□□□ -0.31
COL7A1-206ENST00000466591 CADM3Q8N126 398 aa13.09□□□□□ -0.31
COL7A1-206ENST00000466591 SLC35G3Q8N808 338 aa13.09□□□□□ -0.31
COL7A1-206ENST00000466591 CHRDL1Q9BU40 450 aa13.09□□□□□ -0.31
COL7A1-206ENST00000466591 FAM212BQ9NTI7 297 aaPredicted RBP13.09□□□□□ -0.31
COL7A1-206ENST00000466591 TMEM14BQ9NUH8 114 aa13.09□□□□□ -0.31
COL7A1-206ENST00000466591 DNAH7Q8WXX0 4024 aa13.09□□□□□ -0.31
COL7A1-206ENST00000466591 IGKV3-7A0A075B6H7 116 aa13.08□□□□□ -0.32
COL7A1-206ENST00000466591 C15orf62A8K5M9 175 aa13.08□□□□□ -0.32
COL7A1-206ENST00000466591 K7EIM0 57 aa13.08□□□□□ -0.32
COL7A1-206ENST00000466591 K7EMT4 169 aa13.08□□□□□ -0.32
COL7A1-206ENST00000466591 IFNA17P01571 189 aa13.08□□□□□ -0.32
COL7A1-206ENST00000466591 TFPI2P48307 235 aa13.08□□□□□ -0.32
COL7A1-206ENST00000466591 MFAP2P55001 183 aa13.08□□□□□ -0.32
COL7A1-206ENST00000466591 TRIM16LQ309B1 348 aa13.08□□□□□ -0.32
COL7A1-206ENST00000466591 ENY2Q9NPA8 101 aa13.08□□□□□ -0.32
COL7A1-206ENST00000466591 COPZ2Q9P299 210 aa13.08□□□□□ -0.32
COL7A1-206ENST00000466591 SPRY2O43597 315 aa13.07□□□□□ -0.32
COL7A1-206ENST00000466591 SCGB2A1O75556 95 aa13.07□□□□□ -0.32
COL7A1-206ENST00000466591 CTSDP07339 412 aaPredicted RBP13.07□□□□□ -0.32
COL7A1-206ENST00000466591 RPL35AP18077 110 aaKnown RBP13.07□□□□□ -0.32
COL7A1-206ENST00000466591 PPP5CP53041 499 aa13.07□□□□□ -0.32
COL7A1-206ENST00000466591 UCP3P55916 312 aa13.07□□□□□ -0.32
COL7A1-206ENST00000466591 PAFAH1B2P68402 229 aa13.07□□□□□ -0.32
COL7A1-206ENST00000466591 PRCDQ00LT1 54 aa13.07□□□□□ -0.32
COL7A1-206ENST00000466591 DEFB135Q30KP9 77 aa13.07□□□□□ -0.32
COL7A1-206ENST00000466591 CCDC71LQ8N9Z2 235 aa13.07□□□□□ -0.32
COL7A1-206ENST00000466591 TMEM116Q8NCL8 245 aa13.07□□□□□ -0.32
COL7A1-206ENST00000466591 C15orf40Q8WUR7 153 aa13.07□□□□□ -0.32
COL7A1-206ENST00000466591 GINS3Q9BRX5 216 aa13.07□□□□□ -0.32
COL7A1-206ENST00000466591 EXTL2Q9UBQ6 330 aa13.07□□□□□ -0.32
COL7A1-206ENST00000466591 IGHV3-49A0A0A0MS15 119 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 DBX1A6NMT0 343 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 UBE2CO00762 179 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 MT-CO2P00403 227 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 IGHV3-48P01763 117 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 HOXA1P49639 335 aaPredicted RBP13.06□□□□□ -0.32
COL7A1-206ENST00000466591 SUB1P53999 127 aaKnown RBP eCLIP13.06□□□□□ -0.32
COL7A1-206ENST00000466591 CMC4P56277 68 aaPredicted RBP13.06□□□□□ -0.32
COL7A1-206ENST00000466591 PIGPP57054 158 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 HSPE1P61604 102 aaKnown RBP13.06□□□□□ -0.32
COL7A1-206ENST00000466591 RPL11P62913 178 aaKnown RBP13.06□□□□□ -0.32
COL7A1-206ENST00000466591 SCGB2B2Q4G0G5 96 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 SPINK9Q5DT21 86 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 TMEM217Q8N7C4 229 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 DUSP18Q8NEJ0 188 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 RRNAD1Q96FB5 475 aaKnown RBP13.06□□□□□ -0.32
COL7A1-206ENST00000466591 ZNF486Q96H40 463 aaPredicted RBP13.06□□□□□ -0.32
COL7A1-206ENST00000466591 SEC22AQ96IW7 307 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 TXN2Q99757 166 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 OVOL2Q9BRP0 275 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 RHPN1-AS1Q9BWJ2 59 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 TENM2Q9NT68 2774 aa13.06□□□□□ -0.32
COL7A1-206ENST00000466591 TRAV14DV4A0A0A6YYC5 116 aa13.05□□□□□ -0.32
COL7A1-206ENST00000466591 RGS5O15539 181 aa13.05□□□□□ -0.32
COL7A1-206ENST00000466591 PI3P19957 117 aa13.05□□□□□ -0.32
COL7A1-206ENST00000466591 ADMP35318 185 aa13.05□□□□□ -0.32
COL7A1-206ENST00000466591 NPBWR1P48145 328 aa13.05□□□□□ -0.32
COL7A1-206ENST00000466591 Q6ZWC4 215 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms