RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 TCF19Q9Y242 345 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 STRAPQ9Y3F4 350 aaKnown RBP10.33□□□□□ -0.76
VPS13D-205ENST00000473099 OR51B2Q9Y5P1 312 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 CSMD2Q7Z408 3487 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 IGHV3-72A0A0B4J1Y9 119 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 IGHV1-69DA0A0B4J2H0 117 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 FAM24AA6NFZ4 105 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 IGLV2-23P01705 113 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 IGHV1-69P01742 117 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 IAPPP10997 89 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 SAA4P35542 130 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 HOXA1P49639 335 aaPredicted RBP10.32□□□□□ -0.76
VPS13D-205ENST00000473099 BPIFB3P59826 476 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 PRCDQ00LT1 54 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 EBI3Q14213 229 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 ZNF266Q14584 549 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 SSX2Q16385 188 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 LDLRAD2Q5SZI1 272 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 EIF5AL1Q6IS14 154 aaKnown RBP10.32□□□□□ -0.76
VPS13D-205ENST00000473099 THNSL2Q86YJ6 484 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 ZNF680Q8NEM1 530 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 OR1L8Q8NGR8 309 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 ST8SIA2Q92186 375 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 Q96MF0 132 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 FOXC2Q99958 501 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 KIAA1456Q9P272 454 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 FBXL17Q9UF56 701 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 UBQLN2Q9UHD9 624 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 CELSR1Q9NYQ6 3014 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 ABCA1O95477 2261 aa10.32□□□□□ -0.76
VPS13D-205ENST00000473099 PDZD2O15018 2839 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 TRAV3A0A0B4J244 114 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 A0A1W2PN81 502 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 A0A1W2PRD5 423 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 A0A1W2PRF3 423 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 A0A1W2PRM7 423 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 IGSF23A1L1A6 192 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 RNF223E7ERA6 249 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 INS-IGF2F8WCM5 200 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 KCNAB3O43448 404 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 SLC25A17O43808 307 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 DFFBO76075 338 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 TMEM50AO95807 157 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 CHRNA7P36544 502 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 F2RL1P55085 397 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 PSG5Q15238 335 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 SPANXN5Q5MJ07 72 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 TMEM14EPQ6UXP3 125 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 PDZD9Q8IXQ8 264 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 UBAC2Q8NBM4 344 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 OR1S2Q8NGQ3 325 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 PLEKHA3Q9HB20 300 aa10.31□□□□□ -0.76
VPS13D-205ENST00000473099 HEYLQ9NQ87 328 aaPredicted RBP10.31□□□□□ -0.76
VPS13D-205ENST00000473099 TRAV40A0A0B4J280 105 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 H3BP45 60 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 RRHO14718 337 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 ACTL6BO94805 426 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 CRYGBP07316 175 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 FAM106CPP0CH98 169 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 VDAC2P45880 294 aaPredicted RBP10.3□□□□□ -0.76
VPS13D-205ENST00000473099 DYNLT3P51808 116 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 RAB11AP62491 216 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 NHLH2Q02577 135 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 EXOSC2Q13868 293 aaKnown RBP10.3□□□□□ -0.76
VPS13D-205ENST00000473099 HES1Q14469 280 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 ATP6V1FQ16864 119 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 TMEM249Q2WGJ8 235 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 PPP1R27Q86WC6 154 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 BAP18Q8IXM2 172 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 NPBQ8NG41 125 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 SCARB1Q8WTV0 552 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 ZDHHC16Q969W1 377 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 PINX1Q96BK5 328 aaKnown RBP10.3□□□□□ -0.76
VPS13D-205ENST00000473099 CYTL1Q9NRR1 136 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 C1RLQ9NZP8 487 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 SIGLEC9Q9Y336 463 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 NAV3Q8IVL0 2385 aa10.3□□□□□ -0.76
VPS13D-205ENST00000473099 TEX50A0A1B0GTY4 177 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 NBR2O15453 112 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 NDUFA3O95167 84 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 IGKV1D-33P01593 117 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 IGKV1-33P01594 117 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 SNRNP70P08621 437 aaKnown RBP10.29□□□□□ -0.76
VPS13D-205ENST00000473099 IGHV4-31P0DP07 118 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 PLGLAQ15195 96 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 MMDQ15546 238 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 PRSS8Q16651 343 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 KRTAP1-3Q8IUG1 177 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 TEX29Q8N6K0 151 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 OR5C1Q8NGR4 320 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 EAF1Q96JC9 268 aaPredicted RBP10.29□□□□□ -0.76
VPS13D-205ENST00000473099 ATP5SQ99766 215 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 SRSF8Q9BRL6 282 aaKnown RBP10.29□□□□□ -0.76
VPS13D-205ENST00000473099 ZNF430Q9H8G1 570 aaPredicted RBP10.29□□□□□ -0.76
VPS13D-205ENST00000473099 NDUFA4L2Q9NRX3 87 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 METTL1Q9UBP6 276 aaKnown RBP10.29□□□□□ -0.76
VPS13D-205ENST00000473099 CSPG4Q6UVK1 2322 aa10.29□□□□□ -0.76
VPS13D-205ENST00000473099 CST7O76096 145 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 TGFAP01135 160 aa10.28□□□□□ -0.76
VPS13D-205ENST00000473099 IFNA10P01566 189 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms