RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 VENTXO95231 258 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 TPT1P13693 172 aaKnown RBP3.33□□□□□ -1.88
MCF2-201ENST00000338585 USF1P22415 310 aaPredicted RBP3.33□□□□□ -1.88
MCF2-201ENST00000338585 MC5RP33032 325 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 VDAC2P45880 294 aaPredicted RBP3.33□□□□□ -1.88
MCF2-201ENST00000338585 SULT1A1P50225 295 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 RAB13P51153 203 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 SPCS3P61009 180 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 HNF4GQ14541 408 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 MRGPRG-AS1Q2M3A8 158 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 DEFB113Q30KQ7 82 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 OR8G2PQ6IF36 304 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 TMEM14EPQ6UXP3 125 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 ZNF429Q86V71 674 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 HSD17B11Q8NBQ5 300 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 SCARB1Q8WTV0 552 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 TMEM170AQ8WVE7 144 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 CFHR4Q92496 578 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 AJUBAQ96IF1 538 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 CXorf58Q96LI9 332 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 SLC25A31Q9H0C2 315 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 SH3BGRL3Q9H299 93 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 ZNF430Q9H8G1 570 aaPredicted RBP3.33□□□□□ -1.88
MCF2-201ENST00000338585 BET1LQ9NYM9 111 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 POLR3KQ9Y2Y1 108 aaPredicted RBP3.33□□□□□ -1.88
MCF2-201ENST00000338585 OR51B2Q9Y5P1 312 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 VPS13CQ709C8 3753 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 TEX50A0A1B0GTY4 177 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 A0A1B0GW64 132 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 CGB1A6NKQ9 187 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 RRHO14718 337 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 TAAR5O14804 337 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 MSMBP08118 114 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 NMBP08949 121 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 SAA4P35542 130 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 HOXA1P49639 335 aaPredicted RBP3.32□□□□□ -1.88
MCF2-201ENST00000338585 DSCR9P59020 149 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 TAS2R30P59541 319 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 HSPE1P61604 102 aaKnown RBP3.32□□□□□ -1.88
MCF2-201ENST00000338585 RUNX1Q01196 453 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 PAX8Q06710 450 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 PSG5Q15238 335 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 RUSC1-AS1Q66K80 236 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 STX12Q86Y82 276 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 THNSL2Q86YJ6 484 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 OR10W1Q8NGF6 305 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 OR52E5Q8NH55 327 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 TMEM167AQ8TBQ9 72 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 CLCC1Q96S66 551 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 FBXL15Q9H469 300 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 HEYLQ9NQ87 328 aaPredicted RBP3.32□□□□□ -1.88
MCF2-201ENST00000338585 PRNDQ9UKY0 176 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 SOX21Q9Y651 276 aaPredicted RBP3.32□□□□□ -1.88
MCF2-201ENST00000338585 APCP25054 2843 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 SVEP1Q4LDE5 3571 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 CENPVL3A0A0U1RRI6 287 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 PMS2P5A8MQ11 134 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 RNF223E7ERA6 249 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 JTBO76095 146 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 IFNA10P01566 189 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 IGKV1D-33P01593 117 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 IGKV1-33P01594 117 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 SNRNP70P08621 437 aaKnown RBP3.32□□□□□ -1.88
MCF2-201ENST00000338585 SLC25A16P16260 332 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 CEACAM3P40198 252 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 UBE2E1P51965 193 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 ARHGDIBP52566 201 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 F2RL1P55085 397 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 LGALS4P56470 323 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 RPL8P62917 257 aaKnown RBP3.32□□□□□ -1.88
MCF2-201ENST00000338585 BAXQ07812 192 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 SLC38A11Q08AI6 406 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 PDLIM3Q53GG5 364 aaPredicted RBP3.32□□□□□ -1.88
MCF2-201ENST00000338585 CLLU1Q5K131 121 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 Q5PR19 223 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 BRD3OSQ6XYD6 125 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 Q8N3U1 123 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 UBAC2Q8NBM4 344 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 OR1S2Q8NGQ3 325 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 PHYHIPLQ96FC7 376 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 ATP5SQ99766 215 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 ARV1Q9H2C2 271 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 BEX4Q9NWD9 120 aaPredicted RBP3.32□□□□□ -1.88
MCF2-201ENST00000338585 STRAPQ9Y3F4 350 aaKnown RBP3.32□□□□□ -1.88
MCF2-201ENST00000338585 ABCA1O95477 2261 aa3.32□□□□□ -1.88
MCF2-201ENST00000338585 PRRC2AP48634 2157 aaKnown RBP3.32□□□□□ -1.88
MCF2-201ENST00000338585 NAV3Q8IVL0 2385 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 BORCS7-ASMTA0A0B4J1R7 106 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 TRAV40A0A0B4J280 105 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 FCN1O00602 326 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 NPFFO15130 113 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 CRYGBP07316 175 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 FGF2P09038 288 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 FAM157CP0CG43 387 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 APELAP0DMC3 54 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 IGHV4-38-2P0DP08 117 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 LGALS7P47929 136 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 SSBP2P81877 361 aaPredicted RBP3.31□□□□□ -1.88
MCF2-201ENST00000338585 PRCDQ00LT1 54 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 HES1Q14469 280 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms