RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 GNB1P62873 340 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 POU2AF1Q16633 256 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 C19orf54Q5BKX5 351 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 TEX38Q6PEX7 206 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 Q6ZNX1 250 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 SSX9Q7RTT3 188 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 COMMD1Q8N668 190 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 ABHD5Q8WTS1 349 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 OR2A7Q96R45 310 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 AIFM2Q9BRQ8 373 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 ZNF430Q9H8G1 570 aaPredicted RBP12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 FAM212BQ9NTI7 297 aaPredicted RBP12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 COMMD9Q9P000 198 aa12.98□□□□□ -0.33
CCDC28A-202ENST00000611852 A0A1B0GVG6 124 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 LINC00854A0A1B0GVQ3 168 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 ADARB2-AS1A8MUL3 147 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 IGHG4P01861 327 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 NQO2P16083 231 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 LPAR6P43657 344 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 ECSCRQ19T08 205 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 MZT2BQ6NZ67 158 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 NDUFA11Q86Y39 141 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 MMD2Q8IY49 270 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 GRPEL2Q8TAA5 225 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 TMEM167AQ8TBQ9 72 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 RTBDNQ9BSG5 229 aaPredicted RBP12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 C5orf66Q9H5L9 145 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 COPZ2Q9P299 210 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 GPR132Q9UNW8 380 aa12.97□□□□□ -0.33
CCDC28A-202ENST00000611852 TCRBV4S1A1TA0A5B7 111 aa12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 M0QZ24 198 aa12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 CREBL2O60519 120 aaPredicted RBP12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 OPN1MWP04001 364 aa12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 OPN1MW2P0DN77 364 aa12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 OPN1MW3P0DN78 364 aa12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 TMEM267Q0VDI3 215 aaPredicted RBP12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 FOXE3Q13461 319 aa12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 TNXAQ16473 311 aa12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 AKIRIN2Q53H80 203 aa12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 OR4A47Q6IF82 309 aa12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 LFNGQ8NES3 379 aa12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 R3HDM4Q96D70 268 aa12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 BET1LQ9NYM9 111 aa12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 C14orf166Q9Y224 244 aaKnown RBP12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 TSSC4Q9Y5U2 329 aaPredicted RBP12.96□□□□□ -0.33
CCDC28A-202ENST00000611852 WNK1Q9H4A3 2382 aa12.95□□□□□ -0.34
CCDC28A-202ENST00000611852 MARCH11A6NNE9 402 aa12.95□□□□□ -0.34
CCDC28A-202ENST00000611852 IGLV1-40P01703 118 aa12.95□□□□□ -0.34
CCDC28A-202ENST00000611852 ELANEP08246 267 aa12.95□□□□□ -0.34
CCDC28A-202ENST00000611852 IL6RP08887 468 aaPredicted RBP12.95□□□□□ -0.34
CCDC28A-202ENST00000611852 C2orf68Q2NKX9 166 aa12.95□□□□□ -0.34
CCDC28A-202ENST00000611852 NSUN5P1Q3KNT7 163 aa12.95□□□□□ -0.34
CCDC28A-202ENST00000611852 RNF152Q8N8N0 203 aa12.95□□□□□ -0.34
CCDC28A-202ENST00000611852 CCDC71LQ8N9Z2 235 aa12.95□□□□□ -0.34
CCDC28A-202ENST00000611852 TRRAPQ9Y4A5 3859 aa12.95□□□□□ -0.34
CCDC28A-202ENST00000611852 hCG_2014768A0A024R1R8 64 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 CENPXA8MT69 81 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 H0Y980 276 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 LYRM1O43325 122 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 SOX15O60248 233 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 ACTL6BO94805 426 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 KRASP01116 189 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 PSMB8P28062 276 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 PRR31Q5SQ13 230 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 UNQ5815/PRO19632Q6UWF5 114 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 LCNL1Q6ZST4 164 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 DMBX1Q8NFW5 382 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 OR4A5Q8NH83 315 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 ENKURQ8TC29 256 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 SRSF12Q8WXF0 261 aaKnown RBP12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 TP53RKQ96S44 253 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 TMEM140Q9NV12 185 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 VSIG4Q9Y279 399 aa12.94□□□□□ -0.34
CCDC28A-202ENST00000611852 C3orf85A0A1B0GTC6 90 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 A0A1W2PN81 502 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 A0A1W2PRX2 142 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 MSGN1A6NI15 193 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 TSPAN15O95858 294 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 IGKV1-39P01597 117 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 IGKV1D-39P04432 117 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 RPLP1P05386 114 aaKnown RBP12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 RPA2P15927 270 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 CHRNA7P36544 502 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 ERVK-16P61578 105 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 RPL8P62917 257 aaKnown RBP12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 CXorf66Q5JRM2 361 aaPredicted RBP12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 KHDC1LQ5JSQ8 128 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 C10orf55Q5SWW7 151 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 ASPHD1Q5U4P2 390 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 NRARPQ7Z6K4 114 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 SCGB3A2Q96PL1 93 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 C7orf50Q9BRJ6 194 aaKnown RBP12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 FOXA2Q9Y261 457 aaPredicted RBP12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 TRAV3A0A0B4J244 114 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 UPK2O00526 184 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 PLA2G10O15496 165 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 SERPINE2P07093 398 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 MAS1LP35410 378 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 G6PCP35575 357 aa12.93□□□□□ -0.34
CCDC28A-202ENST00000611852 RPL23AP62750 156 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms