RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 TRAV6A0A075B6T7 132 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 TRAV3A0A0B4J244 114 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 MARCH11A6NNE9 402 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 UPK2O00526 184 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 B3GALNT1O75752 331 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 SFT2D2O95562 160 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 CDS2O95674 445 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 VDAC2P45880 294 aaPredicted RBP6.76□□□□□ -1.33
NUP88-211ENST00000575976 DEFA1P59665 94 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 DEFA3P59666 94 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 ERVK-16P61578 105 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 SSBP2P81877 361 aaPredicted RBP6.76□□□□□ -1.33
NUP88-211ENST00000575976 NDPQ00604 133 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 PPP1R1AQ13522 171 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 PRSS8Q16651 343 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 AWAT1Q58HT5 328 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 OR4A47Q6IF82 309 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 ZNF562Q6V9R5 426 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 NRARPQ7Z6K4 114 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 DUSP18Q8NEJ0 188 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 LHFPL5Q8TAF8 219 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 VSTM2AQ8TAG5 236 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 TMEM167AQ8TBQ9 72 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 ENKURQ8TC29 256 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 SEC22AQ96IW7 307 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 TMEM222Q9H0R3 208 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 OR51J1Q9H342 316 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 ZNF430Q9H8G1 570 aaPredicted RBP6.76□□□□□ -1.33
NUP88-211ENST00000575976 BEX1Q9HBH7 125 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 TMEM140Q9NV12 185 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 BET1LQ9NYM9 111 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 LINC00527Q9UJ94 153 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 FBXO7Q9Y3I1 522 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 RNF114Q9Y508 228 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 NUBP2Q9Y5Y2 271 aa6.76□□□□□ -1.33
NUP88-211ENST00000575976 A0A1B0GUS0 222 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 C9orf170A2RU37 121 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 ATP6V0E1O15342 81 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 KCNAB3O43448 404 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 KBTBD11O94819 623 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 IGKV1-5P01602 117 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 H2AFB2P0C5Z0 115 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 OR4E1P0C645 316 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 OR9G9P0C7N8 305 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 EGR2P11161 476 aaPredicted RBP6.75□□□□□ -1.33
NUP88-211ENST00000575976 ANXA3P12429 323 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 MYOD1P15172 320 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 SPNP16150 400 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 PROK1P58294 105 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 GNB1P62873 340 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 FXYD3Q14802 87 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 TNXAQ16473 311 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 IZUMO4Q1ZYL8 232 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 C10orf55Q5SWW7 151 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 TMEM268Q5VZI3 342 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 ZNF695Q8IW36 515 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 FOXRED2Q8IWF2 684 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 MMD2Q8IY49 270 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 SELENOHQ8IZQ5 122 aaKnown RBP6.75□□□□□ -1.33
NUP88-211ENST00000575976 OR4A5Q8NH83 315 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 CASTOR1Q8WTX7 329 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 TMEM56Q96MV1 263 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 NOL4LQ96MY1 436 aaPredicted RBP6.75□□□□□ -1.33
NUP88-211ENST00000575976 FAM103A1Q9BTL3 118 aaKnown RBP6.75□□□□□ -1.33
NUP88-211ENST00000575976 WNT10AQ9GZT5 417 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 ALX4Q9H161 411 aaPredicted RBP6.75□□□□□ -1.33
NUP88-211ENST00000575976 PALMDQ9NP74 551 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 PARP11Q9NR21 331 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 NUDT15Q9NV35 164 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 NSG2Q9Y328 171 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 MMP24Q9Y5R2 645 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 TMEM56-RWDD3S4R434 201 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 TGP01266 2768 aa6.75□□□□□ -1.33
NUP88-211ENST00000575976 A0A0G2JRQ6 117 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 AP4M1O00189 453 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 ACTL6BO94805 426 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 ATG12O94817 140 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 CNIH1O95406 144 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 HLA-AP01891 365 aaKnown RBP6.74□□□□□ -1.33
NUP88-211ENST00000575976 OPN1MWP04001 364 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 IGF1P05019 195 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 OPN1MW2P0DN77 364 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 OPN1MW3P0DN78 364 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 COMPP49747 757 aaPredicted RBP6.74□□□□□ -1.33
NUP88-211ENST00000575976 MECP2P51608 486 aaKnown RBP6.74□□□□□ -1.33
NUP88-211ENST00000575976 AKR1C2P52895 323 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 RAB25P57735 213 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 KRTAP10-3P60369 221 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 UBE2MP61081 183 aaKnown RBP6.74□□□□□ -1.33
NUP88-211ENST00000575976 RPL8P62917 257 aaKnown RBP6.74□□□□□ -1.33
NUP88-211ENST00000575976 DHRS2Q13268 280 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 DCTN2Q13561 401 aaKnown RBP6.74□□□□□ -1.33
NUP88-211ENST00000575976 ANKRD55Q3KP44 614 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 H2BFWTQ7Z2G1 175 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 LYG2Q86SG7 212 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 CADM3Q8N126 398 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 LGI3Q8N145 548 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 STPG2Q8N412 459 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 KLHDC1Q8N7A1 406 aa6.74□□□□□ -1.33
NUP88-211ENST00000575976 SLC35G3Q8N808 338 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms