RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 TMEM140Q9NV12 185 aa13.54□□□□□ -0.24
NUP88-210ENST00000574867 FGF2P09038 288 aa13.53□□□□□ -0.24
NUP88-210ENST00000574867 G6PCP35575 357 aa13.53□□□□□ -0.24
NUP88-210ENST00000574867 C4orf46Q504U0 113 aa13.53□□□□□ -0.24
NUP88-210ENST00000574867 ZNF695Q8IW36 515 aa13.53□□□□□ -0.24
NUP88-210ENST00000574867 MMD2Q8IY49 270 aa13.53□□□□□ -0.24
NUP88-210ENST00000574867 A0A1B0GUS0 222 aa13.52□□□□□ -0.24
NUP88-210ENST00000574867 CA2P00918 260 aa13.52□□□□□ -0.24
NUP88-210ENST00000574867 AKR1C2P52895 323 aa13.52□□□□□ -0.24
NUP88-210ENST00000574867 PRSS8Q16651 343 aa13.52□□□□□ -0.24
NUP88-210ENST00000574867 LGI3Q8N145 548 aa13.52□□□□□ -0.24
NUP88-210ENST00000574867 HSPB9Q9BQS6 159 aa13.52□□□□□ -0.24
NUP88-210ENST00000574867 BEX1Q9HBH7 125 aa13.52□□□□□ -0.24
NUP88-210ENST00000574867 ATRQ13535 2644 aa13.52□□□□□ -0.25
NUP88-210ENST00000574867 IGHV7-81A0A0B4J1V7 117 aa13.52□□□□□ -0.25
NUP88-210ENST00000574867 C9orf170A2RU37 121 aa13.52□□□□□ -0.25
NUP88-210ENST00000574867 VDAC2P45880 294 aaPredicted RBP13.52□□□□□ -0.25
NUP88-210ENST00000574867 FOXL1Q12952 345 aa13.52□□□□□ -0.25
NUP88-210ENST00000574867 DHRS2Q13268 280 aa13.52□□□□□ -0.25
NUP88-210ENST00000574867 TMEM268Q5VZI3 342 aa13.52□□□□□ -0.25
NUP88-210ENST00000574867 ZNF562Q6V9R5 426 aa13.52□□□□□ -0.25
NUP88-210ENST00000574867 Q6ZS46 218 aa13.52□□□□□ -0.25
NUP88-210ENST00000574867 LYG2Q86SG7 212 aa13.52□□□□□ -0.25
NUP88-210ENST00000574867 FOXRED2Q8IWF2 684 aa13.52□□□□□ -0.25
NUP88-210ENST00000574867 CLCC1Q96S66 551 aa13.52□□□□□ -0.25
NUP88-210ENST00000574867 ZNF430Q9H8G1 570 aaPredicted RBP13.52□□□□□ -0.25
NUP88-210ENST00000574867 ZNF580Q9UK33 172 aa13.52□□□□□ -0.25
NUP88-210ENST00000574867 FCN1O00602 326 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 IL6RP08887 468 aaPredicted RBP13.51□□□□□ -0.25
NUP88-210ENST00000574867 MAS1LP35410 378 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 CX3CL1P78423 397 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 H2BFWTQ7Z2G1 175 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 FAM219AQ8IW50 185 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 SELENOHQ8IZQ5 122 aaKnown RBP13.51□□□□□ -0.25
NUP88-210ENST00000574867 LINC01006Q8NI28 216 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 LHFPL5Q8TAF8 219 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 TAF15Q92804 592 aaKnown RBP eCLIP13.51□□□□□ -0.25
NUP88-210ENST00000574867 RRNAD1Q96FB5 475 aaKnown RBP13.51□□□□□ -0.25
NUP88-210ENST00000574867 C19orf24Q9BVV8 132 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 OR51J1Q9H342 316 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 MMP24Q9Y5R2 645 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 DUXBA0A1W2PPF3 345 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 TMEM89A2RUT3 159 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 AP4M1O00189 453 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 UPK2O00526 184 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 ACTL6BO94805 426 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 DUS4LO95620 317 aaKnown RBP13.51□□□□□ -0.25
NUP88-210ENST00000574867 RPL8P62917 257 aaKnown RBP13.51□□□□□ -0.25
NUP88-210ENST00000574867 MRGPRG-AS1Q2M3A8 158 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 RGS21Q2M5E4 152 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 LRTM2Q8N967 370 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 RNASE11Q8TAA1 199 aaKnown RBP13.51□□□□□ -0.25
NUP88-210ENST00000574867 CASTOR1Q8WTX7 329 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 MARVELD1Q9BSK0 173 aa13.51□□□□□ -0.25
NUP88-210ENST00000574867 A0A0B4J2A0 478 aa13.5□□□□□ -0.25
NUP88-210ENST00000574867 IGKV1-5P01602 117 aa13.5□□□□□ -0.25
NUP88-210ENST00000574867 RAB25P57735 213 aa13.5□□□□□ -0.25
NUP88-210ENST00000574867 PJVKQ0ZLH3 352 aa13.5□□□□□ -0.25
NUP88-210ENST00000574867 COQ8AQ8NI60 647 aa13.5□□□□□ -0.25
NUP88-210ENST00000574867 SERTAD4Q9NUC0 356 aa13.5□□□□□ -0.25
NUP88-210ENST00000574867 SHPKQ9UHJ6 478 aa13.5□□□□□ -0.25
NUP88-210ENST00000574867 CLPSL1A2RUU4 121 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 SNAPC5O75971 98 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 CNIH1O95406 144 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 IGF1P05019 195 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 P0C879 139 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 GNB1P62873 340 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 TNXAQ16473 311 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 ANKRD55Q3KP44 614 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 SLC35G3Q8N808 338 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 ARPC1AQ92747 370 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 LSM10Q969L4 123 aaKnown RBP13.49□□□□□ -0.25
NUP88-210ENST00000574867 PARP11Q9NR21 331 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 PRR13Q9NZ81 148 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 INMT-MINDY4F8WBC2 141 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 PRAF2O60831 178 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 IL5P05113 134 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 HLA-GP17693 338 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 MDKP21741 143 aaPredicted RBP13.49□□□□□ -0.25
NUP88-210ENST00000574867 NDPQ00604 133 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 FXYD3Q14802 87 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 TMEM95Q3KNT9 176 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 PRNDQ9UKY0 176 aa13.49□□□□□ -0.25
NUP88-210ENST00000574867 ATP6V0E1O15342 81 aa13.48□□□□□ -0.25
NUP88-210ENST00000574867 VDAC1P21796 283 aa13.48□□□□□ -0.25
NUP88-210ENST00000574867 COMPP49747 757 aaPredicted RBP13.48□□□□□ -0.25
NUP88-210ENST00000574867 CRIP2P52943 208 aaPredicted RBP13.48□□□□□ -0.25
NUP88-210ENST00000574867 SSBP2P81877 361 aaPredicted RBP13.48□□□□□ -0.25
NUP88-210ENST00000574867 ABHD5Q8WTS1 349 aa13.48□□□□□ -0.25
NUP88-210ENST00000574867 RNF114Q9Y508 228 aa13.48□□□□□ -0.25
NUP88-210ENST00000574867 TRAV3A0A0B4J244 114 aa13.48□□□□□ -0.25
NUP88-210ENST00000574867 DHFRP00374 187 aa13.48□□□□□ -0.25
NUP88-210ENST00000574867 OR9G9P0C7N8 305 aa13.48□□□□□ -0.25
NUP88-210ENST00000574867 ZNF431Q8TF32 576 aaPredicted RBP13.48□□□□□ -0.25
NUP88-210ENST00000574867 CHPT1Q8WUD6 406 aa13.48□□□□□ -0.25
NUP88-210ENST00000574867 MITD1Q8WV92 249 aa13.48□□□□□ -0.25
NUP88-210ENST00000574867 SRSF12Q8WXF0 261 aaKnown RBP13.48□□□□□ -0.25
NUP88-210ENST00000574867 PHB2Q99623 299 aa13.48□□□□□ -0.25
NUP88-210ENST00000574867 GON7Q9BXV9 100 aa13.48□□□□□ -0.25
NUP88-210ENST00000574867 COMMD5Q9GZQ3 224 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms