RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 OR2T6Q8NHC8 308 aa16.76■□□□□ 0.27
VPS29-206ENST00000549578 VSTM2AQ8TAG5 236 aa16.76■□□□□ 0.27
VPS29-206ENST00000549578 ZNF430Q9H8G1 570 aaPredicted RBP16.76■□□□□ 0.27
VPS29-206ENST00000549578 TRAV3A0A0B4J244 114 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 C9orf170A2RU37 121 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 IGKV1-5P01602 117 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 IGHG2P01859 326 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 GNB1P62873 340 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 CX3CL1P78423 397 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 DHRS2Q13268 280 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 PRSS8Q16651 343 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 ANKRD55Q3KP44 614 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 SLC35E3Q7Z769 313 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 ZNF695Q8IW36 515 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 SELENOHQ8IZQ5 122 aaKnown RBP16.75■□□□□ 0.27
VPS29-206ENST00000549578 OR4F5Q8NH21 305 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 TMEM167AQ8TBQ9 72 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 C19orf24Q9BVV8 132 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 C16orf95Q9H693 158 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 BET1LQ9NYM9 111 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 TNCP24821 2201 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 PTTG1O95997 202 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 MDKP21741 143 aaPredicted RBP16.75■□□□□ 0.27
VPS29-206ENST00000549578 AKR1C2P52895 323 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 SSBP2P81877 361 aaPredicted RBP16.75■□□□□ 0.27
VPS29-206ENST00000549578 NDPQ00604 133 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 LYG2Q86SG7 212 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 OR52B4Q8NGK2 314 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 LINC01006Q8NI28 216 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 RBPMSQ93062 196 aaKnown RBP16.75■□□□□ 0.27
VPS29-206ENST00000549578 TMEM56Q96MV1 263 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 ALX4Q9H161 411 aaPredicted RBP16.75■□□□□ 0.27
VPS29-206ENST00000549578 TMEM56-RWDD3S4R434 201 aa16.75■□□□□ 0.27
VPS29-206ENST00000549578 IL6RP08887 468 aaPredicted RBP16.74■□□□□ 0.27
VPS29-206ENST00000549578 VDAC2P45880 294 aaPredicted RBP16.74■□□□□ 0.27
VPS29-206ENST00000549578 MECP2P51608 486 aaKnown RBP16.74■□□□□ 0.27
VPS29-206ENST00000549578 IZUMO4Q1ZYL8 232 aa16.74■□□□□ 0.27
VPS29-206ENST00000549578 H2BFWTQ7Z2G1 175 aa16.74■□□□□ 0.27
VPS29-206ENST00000549578 PARP11Q9NR21 331 aa16.74■□□□□ 0.27
VPS29-206ENST00000549578 SERTAD4Q9NUC0 356 aa16.74■□□□□ 0.27
VPS29-206ENST00000549578 UPK2O00526 184 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 OR9G9P0C7N8 305 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 SRPXP78539 464 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 TNXAQ16473 311 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 ZNF562Q6V9R5 426 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 MMD2Q8IY49 270 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 LGI3Q8N145 548 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 SLC35G3Q8N808 338 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 OR4A5Q8NH83 315 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 RNASE11Q8TAA1 199 aaKnown RBP16.73■□□□□ 0.27
VPS29-206ENST00000549578 TMEM158Q8WZ71 300 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 SEC22CQ9BRL7 303 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 OR51J1Q9H342 316 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 LINC00527Q9UJ94 153 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 NSG2Q9Y328 171 aa16.73■□□□□ 0.27
VPS29-206ENST00000549578 A0A0G2JRQ6 117 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 INMT-MINDY4F8WBC2 141 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 ATP6V0E1O15342 81 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 KCNAB3O43448 404 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 CREBL2O60519 120 aaPredicted RBP16.72■□□□□ 0.27
VPS29-206ENST00000549578 ATG12O94817 140 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 CNIH1O95406 144 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 MYOD1P15172 320 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 FXYD3Q14802 87 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 C10orf55Q5SWW7 151 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 GRPEL2Q8TAA5 225 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 IL22RA2Q969J5 263 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 NOL4LQ96MY1 436 aaPredicted RBP16.72■□□□□ 0.27
VPS29-206ENST00000549578 MARVELD1Q9BSK0 173 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 FAM103A1Q9BTL3 118 aaKnown RBP16.72■□□□□ 0.27
VPS29-206ENST00000549578 FBXO7Q9Y3I1 522 aa16.72■□□□□ 0.27
VPS29-206ENST00000549578 TMEM89A2RUT3 159 aa16.71■□□□□ 0.27
VPS29-206ENST00000549578 P0C879 139 aa16.71■□□□□ 0.27
VPS29-206ENST00000549578 RPL8P62917 257 aaKnown RBP16.71■□□□□ 0.27
VPS29-206ENST00000549578 RGS21Q2M5E4 152 aa16.71■□□□□ 0.27
VPS29-206ENST00000549578 LYZL2Q7Z4W2 148 aa16.71■□□□□ 0.27
VPS29-206ENST00000549578 ABHD5Q8WTS1 349 aa16.71■□□□□ 0.27
VPS29-206ENST00000549578 ARPC1AQ92747 370 aa16.71■□□□□ 0.27
VPS29-206ENST00000549578 RRNAD1Q96FB5 475 aaKnown RBP16.71■□□□□ 0.27
VPS29-206ENST00000549578 CLPSL1A2RUU4 121 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 ACTL6BO94805 426 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 DUS4LO95620 317 aaKnown RBP16.7■□□□□ 0.26
VPS29-206ENST00000549578 HLA-GP17693 338 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 OR2B8PP59922 312 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 FOXL1Q12952 345 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 FOXRED2Q8IWF2 684 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 RNF114Q9Y508 228 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 MMP24Q9Y5R2 645 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 A0A0B4J2A0 478 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 AP4M1O00189 453 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 SNAPC5O75971 98 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 OPN1MWP04001 364 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 OPN1MW2P0DN77 364 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 OPN1MW3P0DN78 364 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 EGR2P11161 476 aaPredicted RBP16.7■□□□□ 0.26
VPS29-206ENST00000549578 COMPP49747 757 aaPredicted RBP16.7■□□□□ 0.26
VPS29-206ENST00000549578 CADM3Q8N126 398 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 LRTM2Q8N967 370 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 SHPKQ9UHJ6 478 aa16.7■□□□□ 0.26
VPS29-206ENST00000549578 DBX1A6NMT0 343 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms