RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 MECP2P51608 486 aaKnown RBP13.55□□□□□ -0.24
LIG1-204ENST00000542460 SRPXP78539 464 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 PRSS8Q16651 343 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 C4orf46Q504U0 113 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 PLET1Q6UQ28 207 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 ZNF562Q6V9R5 426 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 SLC35E3Q7Z769 313 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 ZNF695Q8IW36 515 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 OR4A5Q8NH83 315 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 SPATA3Q8NHX4 192 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 LINC01006Q8NI28 216 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 TMEM167AQ8TBQ9 72 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 HSPB9Q9BQS6 159 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 BEX1Q9HBH7 125 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 TMEM140Q9NV12 185 aa13.55□□□□□ -0.24
LIG1-204ENST00000542460 IGHV7-81A0A0B4J1V7 117 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 PIGBOS1A0A0B4J2F0 54 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 A0A1B0GVG6 124 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 C9orf170A2RU37 121 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 PTTG1O95997 202 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 CA2P00918 260 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 HLA-AP01891 365 aaKnown RBP13.54□□□□□ -0.24
LIG1-204ENST00000542460 IL6RP08887 468 aaPredicted RBP13.54□□□□□ -0.24
LIG1-204ENST00000542460 CX3CL1P78423 397 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 PJVKQ0ZLH3 352 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 FOXL1Q12952 345 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 MMD2Q8IY49 270 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 RBPMSQ93062 196 aaKnown RBP13.54□□□□□ -0.24
LIG1-204ENST00000542460 IL22RA2Q969J5 263 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 ZNF430Q9H8G1 570 aaPredicted RBP13.54□□□□□ -0.24
LIG1-204ENST00000542460 A0A1B0GUS0 222 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 TMEM89A2RUT3 159 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 VDAC2P45880 294 aaPredicted RBP13.54□□□□□ -0.24
LIG1-204ENST00000542460 AKR1C2P52895 323 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 DHRS2Q13268 280 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 MRGPRG-AS1Q2M3A8 158 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 TMEM268Q5VZI3 342 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 H2BFWTQ7Z2G1 175 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 LYG2Q86SG7 212 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 SELENOHQ8IZQ5 122 aaKnown RBP13.54□□□□□ -0.24
LIG1-204ENST00000542460 LGI3Q8N145 548 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 LHFPL5Q8TAF8 219 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 C19orf24Q9BVV8 132 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 OR51J1Q9H342 316 aa13.54□□□□□ -0.24
LIG1-204ENST00000542460 CLPSL1A2RUU4 121 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 LINC01548A6NM66 108 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 UPK2O00526 184 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 ACTL6BO94805 426 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 CNIH1O95406 144 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 IGKV1-5P01602 117 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 FGF2P09038 288 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 FOXRED2Q8IWF2 684 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 CASTOR1Q8WTX7 329 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 RRNAD1Q96FB5 475 aaKnown RBP13.53□□□□□ -0.24
LIG1-204ENST00000542460 MARVELD1Q9BSK0 173 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 SERTAD4Q9NUC0 356 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 PRR13Q9NZ81 148 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 MMP24Q9Y5R2 645 aa13.53□□□□□ -0.24
LIG1-204ENST00000542460 AP4M1O00189 453 aa13.52□□□□□ -0.25
LIG1-204ENST00000542460 MDKP21741 143 aaPredicted RBP13.52□□□□□ -0.25
LIG1-204ENST00000542460 MAS1LP35410 378 aa13.52□□□□□ -0.25
LIG1-204ENST00000542460 RAB25P57735 213 aa13.52□□□□□ -0.25
LIG1-204ENST00000542460 GNB1P62873 340 aa13.52□□□□□ -0.25
LIG1-204ENST00000542460 RPL8P62917 257 aaKnown RBP13.52□□□□□ -0.25
LIG1-204ENST00000542460 FXYD3Q14802 87 aa13.52□□□□□ -0.25
LIG1-204ENST00000542460 TNXAQ16473 311 aa13.52□□□□□ -0.25
LIG1-204ENST00000542460 ANKRD55Q3KP44 614 aa13.52□□□□□ -0.25
LIG1-204ENST00000542460 FAM219AQ8IW50 185 aa13.52□□□□□ -0.25
LIG1-204ENST00000542460 LRTM2Q8N967 370 aa13.52□□□□□ -0.25
LIG1-204ENST00000542460 RNASE11Q8TAA1 199 aaKnown RBP13.52□□□□□ -0.25
LIG1-204ENST00000542460 RNF114Q9Y508 228 aa13.52□□□□□ -0.25
LIG1-204ENST00000542460 TRAV3A0A0B4J244 114 aa13.51□□□□□ -0.25
LIG1-204ENST00000542460 A0A0B4J2A0 478 aa13.51□□□□□ -0.25
LIG1-204ENST00000542460 INMT-MINDY4F8WBC2 141 aa13.51□□□□□ -0.25
LIG1-204ENST00000542460 SNAPC5O75971 98 aa13.51□□□□□ -0.25
LIG1-204ENST00000542460 DUS4LO95620 317 aaKnown RBP13.51□□□□□ -0.25
LIG1-204ENST00000542460 IGF1P05019 195 aa13.51□□□□□ -0.25
LIG1-204ENST00000542460 SSBP2P81877 361 aaPredicted RBP13.51□□□□□ -0.25
LIG1-204ENST00000542460 RGS21Q2M5E4 152 aa13.51□□□□□ -0.25
LIG1-204ENST00000542460 TMEM95Q3KNT9 176 aa13.51□□□□□ -0.25
LIG1-204ENST00000542460 SLC35G3Q8N808 338 aa13.51□□□□□ -0.25
LIG1-204ENST00000542460 ARPC1AQ92747 370 aa13.51□□□□□ -0.25
LIG1-204ENST00000542460 PARP11Q9NR21 331 aa13.51□□□□□ -0.25
LIG1-204ENST00000542460 SHPKQ9UHJ6 478 aa13.51□□□□□ -0.25
LIG1-204ENST00000542460 DUXBA0A1W2PPF3 345 aa13.5□□□□□ -0.25
LIG1-204ENST00000542460 IL5P05113 134 aa13.5□□□□□ -0.25
LIG1-204ENST00000542460 OR9G9P0C7N8 305 aa13.5□□□□□ -0.25
LIG1-204ENST00000542460 P0C879 139 aa13.5□□□□□ -0.25
LIG1-204ENST00000542460 HLA-GP17693 338 aa13.5□□□□□ -0.25
LIG1-204ENST00000542460 VDAC1P21796 283 aa13.5□□□□□ -0.25
LIG1-204ENST00000542460 COMPP49747 757 aaPredicted RBP13.5□□□□□ -0.25
LIG1-204ENST00000542460 LYZL2Q7Z4W2 148 aa13.5□□□□□ -0.25
LIG1-204ENST00000542460 COQ8AQ8NI60 647 aa13.5□□□□□ -0.25
LIG1-204ENST00000542460 ABHD5Q8WTS1 349 aa13.5□□□□□ -0.25
LIG1-204ENST00000542460 LSM10Q969L4 123 aaKnown RBP13.5□□□□□ -0.25
LIG1-204ENST00000542460 ZNF580Q9UK33 172 aa13.5□□□□□ -0.25
LIG1-204ENST00000542460 ATP6V0E1O15342 81 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 PRAF2O60831 178 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 DHFRP00374 187 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 SPNP16150 400 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms