RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 M0R036 132 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 ZG16O60844 167 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 CLRN1P58418 232 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 ERVK11-1P61568 191 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 TLE4Q04727 773 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 USF2Q15853 346 aaPredicted RBP6.14□□□□□ -1.43
CLIP1-205ENST00000514271 TOMM20LQ6UXN7 152 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 TCF24Q7RTU0 167 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 ABHD3Q8WU67 409 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 PIGTQ969N2 578 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 RAB1BQ9H0U4 201 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 PDCD6O75340 191 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 CST2P09228 141 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 IL3RAP26951 378 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 PIGYQ3MUY2 71 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 CST9LP1Q5W188 147 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 Q6P435 159 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 LINC00596Q86U02 117 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 OR1K1Q8NGR3 316 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 GPR146Q96CH1 333 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 PCGF1Q9BSM1 259 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 ULBP2Q9BZM5 246 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 PATZ1Q9HBE1 687 aaKnown RBP6.14□□□□□ -1.43
CLIP1-205ENST00000514271 RNF150Q9ULK6 438 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 SLC45A2Q9UMX9 530 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 CHD8Q9HCK8 2581 aa6.14□□□□□ -1.43
CLIP1-205ENST00000514271 IRF2P14316 349 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 BMP5P22003 454 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 ZNF154Q13106 437 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 CALHM1Q8IU99 346 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 SLC7A10Q9NS82 523 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 ZFP30Q9Y2G7 519 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 FAM90A27PA6NNH2 459 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 RBFOX2O43251 390 aaKnown RBP eCLIP6.13□□□□□ -1.43
CLIP1-205ENST00000514271 NBEAP1P0C6P0 100 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 RAB11AP62491 216 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 MEF2BQ02080 365 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-205ENST00000514271 VWA1Q6PCB0 445 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 CHST4Q8NCG5 386 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 OR2D3Q8NGH3 330 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 NUDT11Q96G61 164 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 CSTL1Q9H114 145 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 C7orf69Q9H7B7 122 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 SLC7A11Q9UPY5 501 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 WIPI2Q9Y4P8 454 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 ARL2-SNX15V9GYD0 113 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 TRAV39A0A0B4J263 110 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 K7EN84 100 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 DHHO43323 396 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 ZNF823P16415 610 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 SELEP16581 610 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 NKX6-1P78426 367 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-205ENST00000514271 PSG4Q00888 419 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 ZNF616Q08AN1 781 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 GABRA6Q16445 453 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 RBPMS2Q6ZRY4 209 aaKnown RBP6.13□□□□□ -1.43
CLIP1-205ENST00000514271 NUFIP2Q7Z417 695 aaKnown RBP6.13□□□□□ -1.43
CLIP1-205ENST00000514271 BOD1L2Q8IYS8 172 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 ZNF114Q8NC26 417 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 ZNF837Q96EG3 531 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-205ENST00000514271 ATG101Q9BSB4 218 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 TMEM106BQ9NUM4 274 aa6.13□□□□□ -1.43
CLIP1-205ENST00000514271 TPRP12270 2363 aaKnown RBP6.13□□□□□ -1.43
CLIP1-205ENST00000514271 ESPL1Q14674 2120 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 CHST1O43916 411 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 FSTL3O95633 263 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 SRSF1Q07955 248 aaKnown RBP eCLIP6.12□□□□□ -1.43
CLIP1-205ENST00000514271 ZNF474Q6S9Z5 364 aaPredicted RBP6.12□□□□□ -1.43
CLIP1-205ENST00000514271 TMEM256Q8N2U0 113 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 OR10G9Q8NGN4 311 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 ORAOV1Q8WV07 137 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 RAB40CQ96S21 281 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 TBL2Q9Y4P3 447 aaKnown RBP6.12□□□□□ -1.43
CLIP1-205ENST00000514271 CFAP47Q6ZTR5 3102 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 IFNA21P01568 189 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 IGLV2-8P01709 118 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 F2RP25116 425 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 GNB1P62873 340 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 FOXF2Q12947 444 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 TOMM40LQ969M1 308 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 OR4C12Q96R67 309 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 PARLQ9H300 379 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 TMEM38BQ9NVV0 291 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 GSKIPQ9P0R6 139 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 LSM4Q9Y4Z0 139 aaKnown RBP6.12□□□□□ -1.43
CLIP1-205ENST00000514271 SMG1Q96Q15 3661 aaKnown RBP6.12□□□□□ -1.43
CLIP1-205ENST00000514271 SMCO3A2RU48 225 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 M0R143 59 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 DFFBO76075 338 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 MSR1P21757 451 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 IGHV1-2P23083 117 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 NKX2-1P43699 371 aaPredicted RBP6.12□□□□□ -1.43
CLIP1-205ENST00000514271 FGF12P61328 243 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 ACOT6Q3I5F7 207 aaPredicted RBP6.12□□□□□ -1.43
CLIP1-205ENST00000514271 NIT1Q86X76 327 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 FAM58AQ8N1B3 248 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 WIPF2Q8TF74 440 aaPredicted RBP6.12□□□□□ -1.43
CLIP1-205ENST00000514271 WFIKKN1Q96NZ8 548 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 FOXB1Q99853 325 aa6.12□□□□□ -1.43
CLIP1-205ENST00000514271 PLK3Q9H4B4 646 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms