RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 THBDP07204 575 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 OR4A8P0C604 315 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 TLE1Q04724 770 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 FAM216BQ8N7L0 139 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 ZNF383Q8NA42 475 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 TCF19Q9Y242 345 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 ANKRD11Q6UB99 2663 aaPredicted RBP12.39□□□□□ -0.43
LDLR-202ENST00000455727 IGHV2-5P01817 119 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 B2MP61769 119 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 SLC25A48Q6ZT89 311 aaKnown RBP12.39□□□□□ -0.43
LDLR-202ENST00000455727 LYG1Q8N1E2 194 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 Q8WTZ3 238 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 RAB1CQ92928 201 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 TMEM14BQ9NUH8 114 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 LINC00312Q9Y6C7 94 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 A0A1W2PPE3 182 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 NKX6-3A6NJ46 265 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 RRHO14718 337 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 ATXN7O15265 892 aaPredicted RBP12.38□□□□□ -0.43
LDLR-202ENST00000455727 HRASP01112 189 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 RND2P52198 227 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 HSPE1P61604 102 aaKnown RBP12.38□□□□□ -0.43
LDLR-202ENST00000455727 CCL8P80075 99 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 MEF2CQ06413 473 aaPredicted RBP12.38□□□□□ -0.43
LDLR-202ENST00000455727 BSPH1Q075Z2 132 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 OR4A47Q6IF82 309 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 MUC6Q6W4X9 2439 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 ACACAQ13085 2346 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 TRAV38-1A0A0B4J264 116 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 OPRK1P41145 380 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 ERVFRD-1P60508 538 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 TGIF2LYQ8IUE0 185 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 SPACA3Q8IXA5 215 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 LRFN3Q9BTN0 628 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 CTDSP1Q9GZU7 261 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 TMPRSS5Q9H3S3 457 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 NAT8Q9UHE5 227 aa12.38□□□□□ -0.43
LDLR-202ENST00000455727 VSTM5A8MXK1 200 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 CLDN34H7C241 214 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 IL6RP08887 468 aaPredicted RBP12.37□□□□□ -0.43
LDLR-202ENST00000455727 CDC34P49427 236 aaPredicted RBP12.37□□□□□ -0.43
LDLR-202ENST00000455727 TBR1Q16650 682 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 TREML4Q6UXN2 200 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 CYP2G1PQ6ZSU1 146 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 ZCCHC14Q8WYQ9 949 aaKnown RBP12.37□□□□□ -0.43
LDLR-202ENST00000455727 DCAF16Q9NXF7 216 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 YLPM1P49750 1951 aaKnown RBP12.37□□□□□ -0.43
LDLR-202ENST00000455727 SMCO3A2RU48 225 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 HMGB3O15347 200 aaKnown RBP12.37□□□□□ -0.43
LDLR-202ENST00000455727 TMPRSS2O15393 492 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 KBTBD11O94819 623 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 RPS10P46783 165 aaKnown RBP12.37□□□□□ -0.43
LDLR-202ENST00000455727 ZNF343Q6P1L6 599 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 C1orf87Q8N0U7 546 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 ABHD12Q8N2K0 398 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 TMEM170AQ8WVE7 144 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 GAL3ST2Q9H3Q3 398 aa12.37□□□□□ -0.43
LDLR-202ENST00000455727 BSNQ9UPA5 3926 aa12.36□□□□□ -0.43
LDLR-202ENST00000455727 AP4M1O00189 453 aa12.36□□□□□ -0.43
LDLR-202ENST00000455727 MMP23AO75900 390 aa12.36□□□□□ -0.43
LDLR-202ENST00000455727 S100A8P05109 93 aa12.36□□□□□ -0.43
LDLR-202ENST00000455727 CXCL1P09341 107 aa12.36□□□□□ -0.43
LDLR-202ENST00000455727 TMEM241Q24JQ0 296 aa12.36□□□□□ -0.43
LDLR-202ENST00000455727 ASCL5Q7RTU5 278 aa12.36□□□□□ -0.43
LDLR-202ENST00000455727 SMIM7Q9BQ49 75 aa12.36□□□□□ -0.43
LDLR-202ENST00000455727 K7ENP7 123 aa12.36□□□□□ -0.43
LDLR-202ENST00000455727 SNRNP40Q96DI7 357 aaKnown RBP12.36□□□□□ -0.43
LDLR-202ENST00000455727 NPVFQ9HCQ7 196 aa12.36□□□□□ -0.43
LDLR-202ENST00000455727 SLC25A10Q9UBX3 287 aaPredicted RBP12.36□□□□□ -0.43
LDLR-202ENST00000455727 PRNDQ9UKY0 176 aa12.36□□□□□ -0.43
LDLR-202ENST00000455727 ZNF257Q9Y2Q1 563 aa12.36□□□□□ -0.43
LDLR-202ENST00000455727 CT45A6P0DMU7 189 aa12.35□□□□□ -0.43
LDLR-202ENST00000455727 CT45A5P0DMU8 189 aa12.35□□□□□ -0.43
LDLR-202ENST00000455727 CT45A7P0DMV0 189 aa12.35□□□□□ -0.43
LDLR-202ENST00000455727 NDUFB7P17568 137 aa12.35□□□□□ -0.43
LDLR-202ENST00000455727 GNG10P50151 68 aa12.35□□□□□ -0.43
LDLR-202ENST00000455727 FABP9Q0Z7S8 132 aa12.35□□□□□ -0.43
LDLR-202ENST00000455727 OR13D1Q8NGV5 346 aa12.35□□□□□ -0.43
LDLR-202ENST00000455727 MS4A5Q9H3V2 200 aa12.35□□□□□ -0.43
LDLR-202ENST00000455727 NGBQ9NPG2 151 aa12.35□□□□□ -0.43
LDLR-202ENST00000455727 KCNIP2Q9NS61 270 aa12.35□□□□□ -0.43
LDLR-202ENST00000455727 LSM4Q9Y4Z0 139 aaKnown RBP12.35□□□□□ -0.43
LDLR-202ENST00000455727 MAP1BP46821 2468 aaKnown RBP12.35□□□□□ -0.43
LDLR-202ENST00000455727 FNDC10F2Z333 226 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 TMEM178BH3BS89 294 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 SMIM6P0DI80 62 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 PLA2G5P39877 138 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 RTL8BQ17RB0 113 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 SLC24A4Q8NFF2 622 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 MGST2Q99735 147 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 GGTLC1Q9BX51 225 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 SAP30LQ9HAJ7 183 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 ENY2Q9NPA8 101 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 URGCP-MRPS24S4R325 110 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 APC2O95996 2303 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 PPIAL4EA0A075B759 164 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 TGIF2-C20orf24A0A0A6YYL0 155 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 PPIAL4DF5H284 164 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 TGOLN2O43493 480 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 YIF1AO95070 293 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms