RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SYNGR3O43761 229 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 CLEC19AQ6UXS0 136 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 TIAF1O95411 115 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 NGFRP08138 427 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 TDGF1P13385 188 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 FOXA3P55318 350 aaPredicted RBP10.76□□□□□ -0.69
SDC3-201ENST00000336798 BEND2Q8NDZ0 799 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 ZNFX1Q9P2E3 1918 aaKnown RBP10.76□□□□□ -0.69
SDC3-201ENST00000336798 JOSD1Q15040 202 aaPredicted RBP10.76□□□□□ -0.69
SDC3-201ENST00000336798 SLC25A34Q6PIV7 304 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 GLRX5Q86SX6 157 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 APCDD1LQ8NCL9 501 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 SPAG8Q99932 426 aaPredicted RBP10.76□□□□□ -0.69
SDC3-201ENST00000336798 MRPS16Q9Y3D3 137 aaKnown RBP10.76□□□□□ -0.69
SDC3-201ENST00000336798 SAA1P0DJI8 122 aaPredicted RBP10.76□□□□□ -0.69
SDC3-201ENST00000336798 CDKN1AP38936 164 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 DNASE2BQ8WZ79 361 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 GPR183P32249 361 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 FHITP49789 147 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 TEX29Q8N6K0 151 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 NABP2Q9BQ15 211 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 TMEM70Q9BUB7 260 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 TRGC1P0CF51 173 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 RPS11P62280 158 aaKnown RBP eCLIP10.75□□□□□ -0.69
SDC3-201ENST00000336798 IRF3Q14653 427 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 TMEM95Q3KNT9 176 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 WDR82Q6UXN9 313 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 SCARF2Q96GP6 870 aaPredicted RBP10.75□□□□□ -0.69
SDC3-201ENST00000336798 TCF19Q9Y242 345 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 SMCHD1A6NHR9 2005 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 TRGV2A0A075B6R0 118 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 FGF5P12034 268 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 FOLR2P14207 255 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 NDUFA2O43678 99 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 FOXH1O75593 365 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 C10orf128Q5T292 105 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 SIGLEC12Q96PQ1 595 aa10.75□□□□□ -0.69
SDC3-201ENST00000336798 COL22A1Q8NFW1 1626 aaPredicted RBP10.74□□□□□ -0.69
SDC3-201ENST00000336798 ZNF324BQ6AW86 544 aaPredicted RBP10.74□□□□□ -0.69
SDC3-201ENST00000336798 OR10AG1Q8NH19 301 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 ST6GALNAC6Q969X2 333 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 RPS20P60866 119 aaKnown RBP10.74□□□□□ -0.69
SDC3-201ENST00000336798 PMCHL1Q16048 86 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 NSUN5P1Q3KNT7 163 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 TCF24Q7RTU0 167 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 MEGF9Q9H1U4 602 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 C4orf51C9J302 202 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 AGAP20933 346 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 ZNF345Q14585 488 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 VAX1Q5SQQ9 334 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 PEF1Q9UBV8 284 aaKnown RBP10.74□□□□□ -0.69
SDC3-201ENST00000336798 FBXL7Q9UJT9 491 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 A0A1W2PQM1 296 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 HLA-DQB1P01920 261 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 RFPL3SP0C7P2 107 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 SMIM13P0DJ93 91 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 NUTF2P61970 127 aaKnown RBP10.74□□□□□ -0.69
SDC3-201ENST00000336798 FUT5Q11128 374 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 PILRAQ9UKJ1 303 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 RP1L1Q8IWN7 2480 aaPredicted RBP10.74□□□□□ -0.69
SDC3-201ENST00000336798 C3orf36Q3SXR2 165 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 COPS9Q8WXC6 57 aa10.74□□□□□ -0.69
SDC3-201ENST00000336798 MRPL16Q9NX20 251 aaKnown RBP10.74□□□□□ -0.69
SDC3-201ENST00000336798 NDUFA3O95167 84 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 CA1P00915 261 aaPredicted RBP10.73□□□□□ -0.69
SDC3-201ENST00000336798 CD24P25063 80 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 ZNF660Q6AZW8 331 aaPredicted RBP10.73□□□□□ -0.69
SDC3-201ENST00000336798 RNASEH2CQ8TDP1 164 aaKnown RBP10.73□□□□□ -0.69
SDC3-201ENST00000336798 KCNS1Q96KK3 526 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 SFXN3Q9BWM7 321 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 FAM206AQ9NX38 181 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 TRBV5-3A0A0A0MS03 114 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 KLF4O43474 513 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 HLA-DQA1P01909 254 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 HLA-DRB1P01911 266 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 RAB9AP51151 201 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 DNM1P46Q6ZS02 220 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 TMEM186Q96B77 213 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 C7orf69Q9H7B7 122 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 TRAV12-3A0A0B4J271 114 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 BSPH1Q075Z2 132 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 LDLRAD2Q5SZI1 272 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 GFI1BQ5VTD9 330 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 DRAM1Q8N682 238 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 NPFFR1Q9GZQ6 430 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 JPT1Q9UK76 154 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 GPR132Q9UNW8 380 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 MDC1Q14676 2089 aaKnown RBP10.73□□□□□ -0.69
SDC3-201ENST00000336798 IGLV1-36A0A0B4J1U3 117 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 APOBEC3AP31941 199 aaPredicted RBP10.73□□□□□ -0.69
SDC3-201ENST00000336798 CKS1BP61024 79 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 CENPWQ5EE01 88 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 FAM71F2Q6NXP2 309 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 FAM168AQ92567 244 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 SIGMAR1Q99720 223 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 ARID1AO14497 2285 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 GZMMP51124 257 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 FBLN7Q53RD9 439 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 SPSB4Q96A44 273 aa10.73□□□□□ -0.69
SDC3-201ENST00000336798 MALP21145 153 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms