RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 A0A1W2PRX2 142 aa11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 TCRBV4S1A1TA0A5B7 111 aa11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 RLN1P04808 185 aa11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 IFNA6P05013 189 aa11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 CRIP2P52943 208 aaPredicted RBP11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 PRSS8Q16651 343 aa11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 PUSL1Q8N0Z8 303 aaKnown RBP11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 ARRDC1Q8N5I2 433 aa11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 TEX45Q8NA69 505 aa11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 MINDY2Q8NBR6 621 aa11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 TERB2Q8NHR7 220 aa11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 KLK15Q9H2R5 256 aa11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 ZNF580Q9UK33 172 aa11.12□□□□□ -0.63
SHKBP1-217ENST00000598558 TRAV3A0A0B4J244 114 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 TRAV41A0A0B4J266 112 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 S1PR2O95136 353 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 IGHG4P01861 327 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 RPLP1P05386 114 aaKnown RBP11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 IL6RP08887 468 aaPredicted RBP11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 CSF1P09603 554 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 MYOD1P15172 320 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 PPP5CP53041 499 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 CBX3Q13185 183 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 KLF9Q13886 244 aaPredicted RBP11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 KIAA0141Q14154 515 aaPredicted RBP11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 FXYD3Q14802 87 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 BAK1Q16611 211 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 CNPY1Q3B7I2 92 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 SCGB2B2Q4G0G5 96 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 ASPHD1Q5U4P2 390 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 SSX9Q7RTT3 188 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 NDUFA11Q86Y39 141 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 Q8N402 240 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 OR13C8Q8NGS7 320 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 OR4S2Q8NH73 311 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 MARCH1Q8TCQ1 289 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 CASTOR1Q8WTX7 329 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 SRRQ9GZT4 340 aa11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 ZNF430Q9H8G1 570 aaPredicted RBP11.11□□□□□ -0.63
SHKBP1-217ENST00000598558 A0A1B0GW64 132 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 E7EUB6 86 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 RBFOX2O43251 390 aaKnown RBP eCLIP11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 IGLV1-40P01703 118 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 AKAIN1P0CW23 69 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 PGAM2P15259 253 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 RPA2P15927 270 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 PTBP1P26599 531 aaKnown RBP eCLIP11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 LPAR6P43657 344 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 GNB1P62873 340 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 ECSCRQ19T08 205 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 VMA21Q3ZAQ7 101 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 C10orf55Q5SWW7 151 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 TBC1D26Q86UD7 250 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 SLC38A6Q8IZM9 456 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 RNF152Q8N8N0 203 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 LFNGQ8NES3 379 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 OR4X2Q8NGF9 303 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 OR51S1Q8NGJ8 323 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 GRPEL2Q8TAA5 225 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 FAM110DQ8TAY7 271 aaPredicted RBP11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 RHOVQ96L33 236 aa11.1□□□□□ -0.63
SHKBP1-217ENST00000598558 VWFP04275 2813 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 M0QZ24 198 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 IGKV1-39P01597 117 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 IGKV1D-39P04432 117 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 VDAC1P21796 283 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 F2RP25116 425 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 PSMB8P28062 276 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 KIR2DS2P43631 304 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 SLC35B1P78383 322 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 CATR1Q13166 79 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 MEF2DQ14814 521 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 LPCAT3Q6P1A2 487 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 TEX38Q6PEX7 206 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 CMTM1Q8IZ96 169 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 TMEM167AQ8TBQ9 72 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 ARPC1AQ92747 370 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 RTBDNQ9BSG5 229 aaPredicted RBP11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 HRASLSQ9HDD0 168 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 SLC2A9Q9NRM0 540 aa11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 TSSC4Q9Y5U2 329 aaPredicted RBP11.09□□□□□ -0.63
SHKBP1-217ENST00000598558 CMYA5Q8N3K9 4069 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 MSGN1A6NI15 193 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 CGB1A6NKQ9 187 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 DISC1C4P0D8 188 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 MPPED1O15442 326 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 OR2A4O95047 310 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 CNIH1O95406 144 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 HPRT1P00492 218 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 APELAP0DMC3 54 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 RND3P61587 244 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 RPL23AP62750 156 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 FOXE3Q13461 319 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 TNXAQ16473 311 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 POU2AF1Q16633 256 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 AKIRIN2Q53H80 203 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 SPANXN2Q5MJ10 180 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 OR4A47Q6IF82 309 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 UNQ5815/PRO19632Q6UWF5 114 aa11.08□□□□□ -0.64
SHKBP1-217ENST00000598558 TREML4Q6UXN2 200 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms