RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 IGLV1-51P01701 117 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 HLA-DQB1P01920 261 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 OR9G9P0C7N8 305 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 SPNP16150 400 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 MAS1LP35410 378 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 ARPC4P59998 168 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 MSMO1Q15800 293 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 PRSS8Q16651 343 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 RPEL1Q2QD12 228 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 TIMM50Q3ZCQ8 353 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 LCN12Q6JVE5 192 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 ZNF343Q6P1L6 599 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 ZNF773Q6PK81 442 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 CROCCP3Q8IVE0 287 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 OR5T1Q8NG75 326 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 OR9G4Q8NGQ1 327 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 OR2K2Q8NGT1 345 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 MAFIPQ8WZ33 124 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 BORCS5Q969J3 196 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 ST6GALNAC5Q9BVH7 336 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 RHBDL2Q9NX52 303 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 SIGLEC8Q9NYZ4 499 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 ANXA10Q9UJ72 324 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 RBMX2Q9Y388 322 aaKnown RBP7.49□□□□□ -1.21
CIITA-207ENST00000571545 RRP15Q9Y3B9 282 aaKnown RBP7.49□□□□□ -1.21
CIITA-207ENST00000571545 TENM3Q9P273 2699 aa7.49□□□□□ -1.21
CIITA-207ENST00000571545 TMEM235A6NFC5 223 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 MSGN1A6NI15 193 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 LINC00473A8K010 186 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 FCGR3BO75015 233 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 HRASP01112 189 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 SAA1P0DJI8 122 aaPredicted RBP7.48□□□□□ -1.21
CIITA-207ENST00000571545 CBX5P45973 191 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 LINC00205P59089 165 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 SSBP2P81877 361 aaPredicted RBP7.48□□□□□ -1.21
CIITA-207ENST00000571545 PJVKQ0ZLH3 352 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 KLF5Q13887 457 aaPredicted RBP7.48□□□□□ -1.21
CIITA-207ENST00000571545 ZNF66Q6ZN08 573 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 GTSCR1Q86UQ5 136 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 NR2C2APQ86WQ0 139 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 LINC00528Q8N1L1 170 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 ADAD2Q8NCV1 583 aaKnown RBP7.48□□□□□ -1.21
CIITA-207ENST00000571545 LGALS14Q8TCE9 139 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 DIABLOQ9NR28 239 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 ZNF257Q9Y2Q1 563 aa7.48□□□□□ -1.21
CIITA-207ENST00000571545 TNCP24821 2201 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 ANKRD34BA5PLL1 514 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 DPPA5A6NC42 116 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 SRRM4A7MD48 611 aaKnown RBP7.47□□□□□ -1.21
CIITA-207ENST00000571545 A8MZ25 164 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 KBTBD11O94819 623 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 FRMD6-AS1P0C7T7 363 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 NFYAP23511 347 aaPredicted RBP7.47□□□□□ -1.21
CIITA-207ENST00000571545 SDC2P34741 201 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 CATR1Q13166 79 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 Q8N402 240 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 NECAP1Q8NC96 275 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 ZBTB34Q8NCN2 500 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 BEST4Q8NFU0 473 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 OR4A5Q8NH83 315 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 NUDCD2Q8WVJ2 157 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 TCTEX1D2Q8WW35 142 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 C5orf30Q96GV9 206 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 RCHY1Q96PM5 261 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 OR2A7Q96R45 310 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 ASCL2Q99929 193 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 OR51E2Q9H255 320 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 ZNF430Q9H8G1 570 aaPredicted RBP7.47□□□□□ -1.21
CIITA-207ENST00000571545 VCX3AQ9NNX9 186 aa7.47□□□□□ -1.21
CIITA-207ENST00000571545 SMIM30A4D0T7 59 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 RBFOX2O43251 390 aaKnown RBP eCLIP7.46□□□□□ -1.22
CIITA-207ENST00000571545 FGF2P09038 288 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 SYNJ2BPP57105 145 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 RHOGP84095 191 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 ATP5G2Q06055 141 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 DYRK1AQ13627 763 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 EXOSC2Q13868 293 aaKnown RBP7.46□□□□□ -1.22
CIITA-207ENST00000571545 KCTD21Q4G0X4 260 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 IDNKQ5T6J7 187 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 LCE2CQ5TA81 110 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 IDO2Q6ZQW0 420 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 SBSPONQ8IVN8 264 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 LAX1Q8IWV1 398 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 TTC9CQ8N5M4 171 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 CD300LFQ8TDQ1 290 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 PGPEP1Q9NXJ5 209 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 SPATA2Q9UM82 520 aa7.46□□□□□ -1.22
CIITA-207ENST00000571545 STAB2Q8WWQ8 2551 aa7.45□□□□□ -1.22
CIITA-207ENST00000571545 IGKV1D-8A0A087WSZ0 117 aa7.45□□□□□ -1.22
CIITA-207ENST00000571545 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.45□□□□□ -1.22
CIITA-207ENST00000571545 TRBV9A0A0B4J1U6 114 aa7.45□□□□□ -1.22
CIITA-207ENST00000571545 LOC100506127A0A0U1RQW1 187 aa7.45□□□□□ -1.22
CIITA-207ENST00000571545 NPIPB5A8MRT5 1133 aa7.45□□□□□ -1.22
CIITA-207ENST00000571545 CYB5BO43169 146 aa7.45□□□□□ -1.22
CIITA-207ENST00000571545 IGHV4-30-4P0DP06 118 aa7.45□□□□□ -1.22
CIITA-207ENST00000571545 HIST1H1BP16401 226 aaKnown RBP7.45□□□□□ -1.22
CIITA-207ENST00000571545 RPL27AP46776 148 aaKnown RBP7.45□□□□□ -1.22
CIITA-207ENST00000571545 THOC7Q6I9Y2 204 aaKnown RBP7.45□□□□□ -1.22
CIITA-207ENST00000571545 HOGA1Q86XE5 327 aa7.45□□□□□ -1.22
CIITA-207ENST00000571545 OR13F1Q8NGS4 319 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms