RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 IGLV2-14P01704 120 aa12.23□□□□□ -0.45
CLN3-229ENST00000567963 HLA-DQB1P01920 261 aa12.23□□□□□ -0.45
CLN3-229ENST00000567963 SAA1P0DJI8 122 aaPredicted RBP12.23□□□□□ -0.45
CLN3-229ENST00000567963 NFYAP23511 347 aaPredicted RBP12.23□□□□□ -0.45
CLN3-229ENST00000567963 FGF9P31371 208 aaPredicted RBP12.23□□□□□ -0.45
CLN3-229ENST00000567963 GABARAPL2P60520 117 aa12.23□□□□□ -0.45
CLN3-229ENST00000567963 CDK10Q15131 360 aa12.23□□□□□ -0.45
CLN3-229ENST00000567963 UBE2UQ5VVX9 321 aa12.23□□□□□ -0.45
CLN3-229ENST00000567963 THAP7Q9BT49 309 aaPredicted RBP12.23□□□□□ -0.45
CLN3-229ENST00000567963 DCUN1D5Q9BTE7 237 aa12.23□□□□□ -0.45
CLN3-229ENST00000567963 AKIP1Q9NQ31 210 aa12.23□□□□□ -0.45
CLN3-229ENST00000567963 TXNL4BQ9NX01 149 aaKnown RBP12.23□□□□□ -0.45
CLN3-229ENST00000567963 FAM223BA6NKX1 122 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 CREBL2O60519 120 aaPredicted RBP12.22□□□□□ -0.45
CLN3-229ENST00000567963 SLC22A5O76082 557 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 ACTL6BO94805 426 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 OR2A4O95047 310 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 PRH1P02810 166 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 RHOGP84095 191 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 ZNF45Q02386 682 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 LCN12Q6JVE5 192 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 FAM223AQ8IWN6 122 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 TTC9CQ8N5M4 171 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 SPIN2AQ99865 258 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 SPIN2BQ9BPZ2 258 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 RBMX2Q9Y388 322 aaKnown RBP12.22□□□□□ -0.45
CLN3-229ENST00000567963 PRELID3BQ9Y3B1 194 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 LYSTQ99698 3801 aa12.22□□□□□ -0.45
CLN3-229ENST00000567963 TUSC2O75896 110 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 CD36P16671 472 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 MECP2P51608 486 aaKnown RBP12.21□□□□□ -0.45
CLN3-229ENST00000567963 RPL30P62888 115 aaKnown RBP12.21□□□□□ -0.45
CLN3-229ENST00000567963 ATP5G2Q06055 141 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 CNIH2Q6PI25 160 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 KCTD9Q7L273 389 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 GTSCR1Q86UQ5 136 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 TPRA1Q86W33 373 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 MMD2Q8IY49 270 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 SPARTQ8N0X7 666 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 Q8N402 240 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 NUDCD2Q8WVJ2 157 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 PEMTQ9UBM1 199 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 TENM2Q9NT68 2774 aa12.21□□□□□ -0.45
CLN3-229ENST00000567963 DYNC2H1Q8NCM8 4307 aaKnown RBP12.21□□□□□ -0.46
CLN3-229ENST00000567963 IGKV1D-13A0A0B4J2D9 117 aa12.21□□□□□ -0.46
CLN3-229ENST00000567963 IZUMO1RA6ND01 250 aa12.21□□□□□ -0.46
CLN3-229ENST00000567963 TMEM235A6NFC5 223 aa12.21□□□□□ -0.46
CLN3-229ENST00000567963 BMPR1BO00238 502 aa12.21□□□□□ -0.46
CLN3-229ENST00000567963 IGKV1-13P0DP09 117 aa12.21□□□□□ -0.46
CLN3-229ENST00000567963 C10orf55Q5SWW7 151 aa12.21□□□□□ -0.46
CLN3-229ENST00000567963 VKORC1L1Q8N0U8 176 aa12.21□□□□□ -0.46
CLN3-229ENST00000567963 OR51E2Q9H255 320 aa12.21□□□□□ -0.46
CLN3-229ENST00000567963 EDA2RQ9HAV5 297 aa12.21□□□□□ -0.46
CLN3-229ENST00000567963 PALMDQ9NP74 551 aa12.21□□□□□ -0.46
CLN3-229ENST00000567963 DAPK2Q9UIK4 370 aa12.21□□□□□ -0.46
CLN3-229ENST00000567963 MRPS7Q9Y2R9 242 aaKnown RBP12.21□□□□□ -0.46
CLN3-229ENST00000567963 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.2□□□□□ -0.46
CLN3-229ENST00000567963 AIREO43918 545 aa12.2□□□□□ -0.46
CLN3-229ENST00000567963 SCGNO76038 276 aa12.2□□□□□ -0.46
CLN3-229ENST00000567963 PSMB9P28065 219 aa12.2□□□□□ -0.46
CLN3-229ENST00000567963 EIF4EBP1Q13541 118 aaPredicted RBP12.2□□□□□ -0.46
CLN3-229ENST00000567963 EXOSC2Q13868 293 aaKnown RBP12.2□□□□□ -0.46
CLN3-229ENST00000567963 HAGHQ16775 308 aa12.2□□□□□ -0.46
CLN3-229ENST00000567963 OR2B11Q5JQS5 317 aa12.2□□□□□ -0.46
CLN3-229ENST00000567963 NECAP1Q8NC96 275 aa12.2□□□□□ -0.46
CLN3-229ENST00000567963 HSD17B10Q99714 261 aaKnown RBP12.2□□□□□ -0.46
CLN3-229ENST00000567963 SPATA25Q9BR10 227 aa12.2□□□□□ -0.46
CLN3-229ENST00000567963 ANXA10Q9UJ72 324 aa12.2□□□□□ -0.46
CLN3-229ENST00000567963 SSX5O60225 188 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 BRWD1-AS2P59051 145 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 GNG2P59768 71 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 SFXN4Q6P4A7 337 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 ADAMTSL5Q6ZMM2 481 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 SLC25A42Q86VD7 318 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 OR2K2Q8NGT1 345 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 VSTM2AQ8TAG5 236 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 ISOC1Q96CN7 298 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 TUBA4BQ9H853 241 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 SPATA2Q9UM82 520 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 SSR3Q9UNL2 185 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 STARD9Q9P2P6 4700 aa12.19□□□□□ -0.46
CLN3-229ENST00000567963 SACSQ9NZJ4 4579 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 HMX3A6NHT5 357 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 TEX22C9J3V5 150 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 E7EUB6 86 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 OR2J3O76001 311 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 KBTBD11O94819 623 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 C15orf32Q32M92 178 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 PUSL1Q8N0Z8 303 aaKnown RBP12.18□□□□□ -0.46
CLN3-229ENST00000567963 MFSD4AQ8N468 514 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 OR4S2Q8NH73 311 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 TCTEX1D2Q8WW35 142 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 FCGR1BQ92637 280 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 KCTD12Q96CX2 325 aaKnown RBP12.18□□□□□ -0.46
CLN3-229ENST00000567963 OR2A7Q96R45 310 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 ZNF257Q9Y2Q1 563 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 DMRT1Q9Y5R6 373 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 RYR2Q92736 4967 aa12.18□□□□□ -0.46
CLN3-229ENST00000567963 IL6RP08887 468 aaPredicted RBP12.17□□□□□ -0.46
CLN3-229ENST00000567963 CD300EQ496F6 205 aaPredicted RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 517.2 ms