RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 ST6GALNAC5Q9BVH7 336 aa11.4□□□□□ -0.58
CLN3-222ENST00000566083 PALMDQ9NP74 551 aa11.4□□□□□ -0.58
CLN3-222ENST00000566083 C19orf73Q9NVV2 129 aa11.4□□□□□ -0.58
CLN3-222ENST00000566083 SHISA3A0PJX4 238 aa11.39□□□□□ -0.59
CLN3-222ENST00000566083 LINC00473A8K010 186 aa11.39□□□□□ -0.59
CLN3-222ENST00000566083 ATP5G2Q06055 141 aa11.39□□□□□ -0.59
CLN3-222ENST00000566083 DYRK1AQ13627 763 aa11.39□□□□□ -0.59
CLN3-222ENST00000566083 UBE2UQ5VVX9 321 aa11.39□□□□□ -0.59
CLN3-222ENST00000566083 KCTD9Q7L273 389 aa11.39□□□□□ -0.59
CLN3-222ENST00000566083 ACOT12Q8WYK0 555 aa11.39□□□□□ -0.59
CLN3-222ENST00000566083 C5orf30Q96GV9 206 aa11.39□□□□□ -0.59
CLN3-222ENST00000566083 HSD17B10Q99714 261 aaKnown RBP11.39□□□□□ -0.59
CLN3-222ENST00000566083 AIFM2Q9BRQ8 373 aa11.39□□□□□ -0.59
CLN3-222ENST00000566083 YTHDF1Q9BYJ9 559 aaKnown RBP11.39□□□□□ -0.59
CLN3-222ENST00000566083 Q9H521 79 aa11.39□□□□□ -0.59
CLN3-222ENST00000566083 HLA-DQB1P01920 261 aa11.38□□□□□ -0.59
CLN3-222ENST00000566083 SNRPBP14678 240 aaKnown RBP11.38□□□□□ -0.59
CLN3-222ENST00000566083 SCAND1P57086 179 aa11.38□□□□□ -0.59
CLN3-222ENST00000566083 GNG2P59768 71 aa11.38□□□□□ -0.59
CLN3-222ENST00000566083 RHOGP84095 191 aa11.38□□□□□ -0.59
CLN3-222ENST00000566083 TTC9CQ8N5M4 171 aa11.38□□□□□ -0.59
CLN3-222ENST00000566083 NECAP1Q8NC96 275 aa11.38□□□□□ -0.59
CLN3-222ENST00000566083 SPATA25Q9BR10 227 aa11.38□□□□□ -0.59
CLN3-222ENST00000566083 ZNF430Q9H8G1 570 aaPredicted RBP11.38□□□□□ -0.59
CLN3-222ENST00000566083 SSR3Q9UNL2 185 aa11.38□□□□□ -0.59
CLN3-222ENST00000566083 RBMX2Q9Y388 322 aaKnown RBP11.38□□□□□ -0.59
CLN3-222ENST00000566083 TRBV9A0A0B4J1U6 114 aa11.37□□□□□ -0.59
CLN3-222ENST00000566083 FCGR3BO75015 233 aa11.37□□□□□ -0.59
CLN3-222ENST00000566083 ATP6V1G2O95670 118 aa11.37□□□□□ -0.59
CLN3-222ENST00000566083 MAS1LP35410 378 aa11.37□□□□□ -0.59
CLN3-222ENST00000566083 MRGPRG-AS1Q2M3A8 158 aa11.37□□□□□ -0.59
CLN3-222ENST00000566083 IL34Q6ZMJ4 242 aa11.37□□□□□ -0.59
CLN3-222ENST00000566083 LAX1Q8IWV1 398 aa11.37□□□□□ -0.59
CLN3-222ENST00000566083 OR4S2Q8NH73 311 aa11.37□□□□□ -0.59
CLN3-222ENST00000566083 ISOC1Q96CN7 298 aa11.37□□□□□ -0.59
CLN3-222ENST00000566083 KCTD12Q96CX2 325 aaKnown RBP11.37□□□□□ -0.59
CLN3-222ENST00000566083 OR51E2Q9H255 320 aa11.37□□□□□ -0.59
CLN3-222ENST00000566083 TUBA4BQ9H853 241 aa11.37□□□□□ -0.59
CLN3-222ENST00000566083 TXNL4BQ9NX01 149 aaKnown RBP11.37□□□□□ -0.59
CLN3-222ENST00000566083 ZNF257Q9Y2Q1 563 aa11.37□□□□□ -0.59
CLN3-222ENST00000566083 IGKV1D-8A0A087WSZ0 117 aa11.36□□□□□ -0.59
CLN3-222ENST00000566083 DHFRP00374 187 aa11.36□□□□□ -0.59
CLN3-222ENST00000566083 IFNA6P05013 189 aa11.36□□□□□ -0.59
CLN3-222ENST00000566083 CSN3P07498 182 aa11.36□□□□□ -0.59
CLN3-222ENST00000566083 SAA1P0DJI8 122 aaPredicted RBP11.36□□□□□ -0.59
CLN3-222ENST00000566083 PSMB9P28065 219 aa11.36□□□□□ -0.59
CLN3-222ENST00000566083 KIR2DS2P43631 304 aa11.36□□□□□ -0.59
CLN3-222ENST00000566083 ZNF66Q6ZN08 573 aa11.36□□□□□ -0.59
CLN3-222ENST00000566083 IDO2Q6ZQW0 420 aa11.36□□□□□ -0.59
CLN3-222ENST00000566083 NR2C2APQ86WQ0 139 aa11.36□□□□□ -0.59
CLN3-222ENST00000566083 AKIP1Q9NQ31 210 aa11.36□□□□□ -0.59
CLN3-222ENST00000566083 ANXA10Q9UJ72 324 aa11.36□□□□□ -0.59
CLN3-222ENST00000566083 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.35□□□□□ -0.59
CLN3-222ENST00000566083 TMEM127O75204 238 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 HRASP01112 189 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 APELAP0DMC3 54 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 NFYAP23511 347 aaPredicted RBP11.35□□□□□ -0.59
CLN3-222ENST00000566083 EXOSC2Q13868 293 aaKnown RBP11.35□□□□□ -0.59
CLN3-222ENST00000566083 MSMO1Q15800 293 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 HAPLN4Q86UW8 402 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 OR2A7Q96R45 310 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 DAPK2Q9UIK4 370 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 A0A0A6YYH2 397 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 DPPA5A6NC42 116 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 TMEM235A6NFC5 223 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 A6NJ64 397 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 TRBV12-3P01733 135 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 SFXN4Q6P4A7 337 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 SPARTQ8N0X7 666 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 ZBTB34Q8NCN2 500 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 TCTEX1D2Q8WW35 142 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 ETV7Q9Y603 341 aa11.35□□□□□ -0.59
CLN3-222ENST00000566083 NPIPB5A8MRT5 1133 aa11.34□□□□□ -0.59
CLN3-222ENST00000566083 J3QRK9 145 aa11.34□□□□□ -0.59
CLN3-222ENST00000566083 KBTBD11O94819 623 aa11.34□□□□□ -0.59
CLN3-222ENST00000566083 MECP2P51608 486 aaKnown RBP11.34□□□□□ -0.59
CLN3-222ENST00000566083 ARPC4P59998 168 aa11.34□□□□□ -0.59
CLN3-222ENST00000566083 C15orf32Q32M92 178 aa11.34□□□□□ -0.59
CLN3-222ENST00000566083 TMEM167AQ8TBQ9 72 aa11.34□□□□□ -0.59
CLN3-222ENST00000566083 NUDCD2Q8WVJ2 157 aa11.34□□□□□ -0.59
CLN3-222ENST00000566083 THAP7Q9BT49 309 aaPredicted RBP11.34□□□□□ -0.59
CLN3-222ENST00000566083 SLC2A9Q9NRM0 540 aa11.34□□□□□ -0.59
CLN3-222ENST00000566083 RHBDL2Q9NX52 303 aa11.34□□□□□ -0.59
CLN3-222ENST00000566083 SLC2A8Q9NY64 477 aa11.34□□□□□ -0.59
CLN3-222ENST00000566083 TECRQ9NZ01 308 aaKnown RBP11.34□□□□□ -0.59
CLN3-222ENST00000566083 ELF5Q9UKW6 265 aaPredicted RBP11.34□□□□□ -0.59
CLN3-222ENST00000566083 HUWE1Q7Z6Z7 4374 aaKnown RBP11.33□□□□□ -0.6
CLN3-222ENST00000566083 BMPR1BO00238 502 aa11.33□□□□□ -0.6
CLN3-222ENST00000566083 GGCTO75223 188 aaKnown RBP11.33□□□□□ -0.6
CLN3-222ENST00000566083 HIST1H1BP16401 226 aaKnown RBP11.33□□□□□ -0.6
CLN3-222ENST00000566083 RPL27AP46776 148 aaKnown RBP11.33□□□□□ -0.6
CLN3-222ENST00000566083 MFSD4AQ8N468 514 aa11.33□□□□□ -0.6
CLN3-222ENST00000566083 OR4A5Q8NH83 315 aa11.33□□□□□ -0.6
CLN3-222ENST00000566083 DYNLRB2Q8TF09 96 aa11.33□□□□□ -0.6
CLN3-222ENST00000566083 SPATA2Q9UM82 520 aa11.33□□□□□ -0.6
CLN3-222ENST00000566083 LGALS9O00182 355 aa11.32□□□□□ -0.6
CLN3-222ENST00000566083 TPPPO94811 219 aa11.32□□□□□ -0.6
CLN3-222ENST00000566083 IGLV2-14P01704 120 aa11.32□□□□□ -0.6
CLN3-222ENST00000566083 RPL30P62888 115 aaKnown RBP11.32□□□□□ -0.6
CLN3-222ENST00000566083 DEFA5Q01523 94 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms