RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TRIM63Q969Q1 353 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 FLYWCH2Q96CP2 140 aaKnown RBP9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 RASL11BQ9BPW5 248 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 THAP7Q9BT49 309 aaPredicted RBP9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 GPR61Q9BZJ8 451 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 SRRQ9GZT4 340 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 KIAA1456Q9P272 454 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 PRELID3BQ9Y3B1 194 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 HUWE1Q7Z6Z7 4374 aaKnown RBP9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 RRHO14718 337 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 TNFSF12O43508 249 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 SPDEFO95238 335 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 ZNF735P0CB33 412 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 UCP3P55916 312 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 RPS16P62249 146 aaKnown RBP9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 CATR1Q13166 79 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 TMEM177Q53S58 311 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 C9orf152Q5JTZ5 239 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 AADACL3Q5VUY0 350 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 FAAP20Q6NZ36 180 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 LPCAT3Q6P1A2 487 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 LINC00299Q6ZSB3 139 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 MFSD4AQ8N468 514 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 OR4X2Q8NGF9 303 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 OR4C16Q8NGL9 310 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 TCTEX1D2Q8WW35 142 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 GPHA2Q96T91 129 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 TSNAXQ99598 290 aaKnown RBP9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 PALMDQ9NP74 551 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 PTTG2Q9NZH5 202 aa9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 TSSC4Q9Y5U2 329 aaPredicted RBP9.35□□□□□ -0.91
SQSTM1-206ENST00000466342 TCRBV4S1A1TA0A5B7 111 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 GPR31O00270 319 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 SHOXO15266 292 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 FCGR3BO75015 233 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 CRYZL1O95825 349 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 IGHG2P01859 326 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 LGALS7P47929 136 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 PSG5Q15238 335 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 C5orf64Q2M2E5 130 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 OR2B11Q5JQS5 317 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 TCTEX1D4Q5JR98 221 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 SLC35E3Q7Z769 313 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 CMTM1Q8IZ96 169 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 SLC38A6Q8IZM9 456 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 GDPD1Q8N9F7 314 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 OR4S2Q8NH73 311 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 OSR1Q8TAX0 266 aaPredicted RBP9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 HARBI1Q96MB7 349 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 RSRP1Q9BUV0 290 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 FBXL15Q9H469 300 aa9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 ZMAT5Q9UDW3 170 aaKnown RBP9.34□□□□□ -0.91
SQSTM1-206ENST00000466342 DISC1C4P0D8 188 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 IGLV2-23P01705 113 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 HLA-DRB1P01911 266 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 KIR2DS2P43631 304 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 BRWD1-AS2P59051 145 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 AP3S2P59780 193 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 ZNF45Q02386 682 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 KLF9Q13886 244 aaPredicted RBP9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 PLGLAQ15195 96 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 SCGB2B2Q4G0G5 96 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 FOXRED2Q8IWF2 684 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 TOMM5Q8N4H5 51 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 OR51H1Q8NH63 302 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 TERB2Q8NHR7 220 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 CHPT1Q8WUD6 406 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 HSPB9Q9BQS6 159 aa9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 METTL1Q9UBP6 276 aaKnown RBP9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 LSM4Q9Y4Z0 139 aaKnown RBP9.33□□□□□ -0.92
SQSTM1-206ENST00000466342 PCLOQ9Y6V0 5065 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 PSMB11A5LHX3 300 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 RBFOX2O43251 390 aaKnown RBP eCLIP9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 SLC25A17O43808 307 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 PGLYRP1O75594 196 aaPredicted RBP9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 RLN1P04808 185 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 PGAM2P15259 253 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 S100GP29377 79 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 FAUP35544 74 aaKnown RBP9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 ECI1P42126 302 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 PPP5CP53041 499 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 PHLDA2Q53GA4 152 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 LIN54Q6MZP7 749 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 SPAG16Q8N0X2 631 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 DEDD2Q8WXF8 326 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 MRGPRFQ96AM1 343 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 ZNF486Q96H40 463 aaPredicted RBP9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 SDHCQ99643 169 aaPredicted RBP9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 ASCL2Q99929 193 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 PRRT1Q99946 306 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 AKIP1Q9NQ31 210 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 SLC2A8Q9NY64 477 aa9.32□□□□□ -0.92
SQSTM1-206ENST00000466342 IGHV7-81A0A0B4J1V7 117 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 LINC01548A6NM66 108 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 SRRM4A7MD48 611 aaKnown RBP9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 AP4M1O00189 453 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 RAMP3O60896 148 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 CRYGBP07316 175 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 UBE2KP61086 200 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 RND3P61587 244 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms