RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SOF1	YLL011W	UTP21	Q06078	939 aa	Predicted RBP	4.83	□□□□□ -1.64
SOF1	YLL011W	VHS3	Q08438	674 aa		4.83	□□□□□ -1.64
SOF1	YLL011W	PUS1	Q12211	544 aa	Known RBP	4.83	□□□□□ -1.64
SOF1	YLL011W	RVB2	Q12464	471 aa	Known RBP	4.83	□□□□□ -1.64
SOF1	YLL011W	YDR461C-A	Q2V2P7	80 aa		4.83	□□□□□ -1.64
SOF1	YLL011W	YOR093C	Q12275	1648 aa		4.83	□□□□□ -1.64
SOF1	YLL011W	MIS1	P09440	975 aa	Known RBP	4.82	□□□□□ -1.64
SOF1	YLL011W	RED1	P14291	827 aa		4.82	□□□□□ -1.64
SOF1	YLL011W	SWI4	P25302	1093 aa	Known RBP	4.82	□□□□□ -1.64
SOF1	YLL011W	IMG2	P25642	146 aa	Predicted RBP	4.82	□□□□□ -1.64
SOF1	YLL011W	RPC82	P32349	654 aa		4.82	□□□□□ -1.64
SOF1	YLL011W	DPH2	P32461	534 aa		4.82	□□□□□ -1.64
SOF1	YLL011W	MTH1	P35198	433 aa		4.82	□□□□□ -1.64
SOF1	YLL011W	TAF5	P38129	798 aa		4.82	□□□□□ -1.64
SOF1	YLL011W	ECM21	P38167	1117 aa	Known RBP	4.82	□□□□□ -1.64
SOF1	YLL011W	YBR225W	P38321	900 aa		4.82	□□□□□ -1.64
SOF1	YLL011W	PIK1	P39104	1066 aa		4.82	□□□□□ -1.64
SOF1	YLL011W	MAD2	P40958	196 aa		4.82	□□□□□ -1.64
SOF1	YLL011W	YML6	P51998	286 aa		4.82	□□□□□ -1.64
SOF1	YLL011W	BTN2	P53286	410 aa		4.82	□□□□□ -1.64
SOF1	YLL011W	YLR346C	Q06139	101 aa		4.82	□□□□□ -1.64
SOF1	YLL011W	YPS7	Q06325	596 aa		4.82	□□□□□ -1.64
SOF1	YLL011W	DBP10	Q12389	995 aa	Known RBP	4.82	□□□□□ -1.64
SOF1	YLL011W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
SOF1	YLL011W	BET2	P20133	325 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	SIR1	P21691	654 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	MF(ALPHA)2	P32435	120 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	AKL1	P38080	1108 aa	Known RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	ALG14	P38242	237 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	AXL1	P40851	1208 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	RMD8	P43620	662 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	ATP22	P50273	684 aa	Predicted RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	MNT2	P53059	558 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	RAI1	P53063	387 aa	Known RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	ARE2	P53629	642 aa	Known RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	YPL071C	Q02864	156 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	IWR1	Q07532	353 aa	Predicted RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	TY1A-BL	Q12266	440 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	CMP2	P14747	604 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	TPM1	P17536	199 aa	Known RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	SGF29	P25554	259 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	DBF4	P32325	704 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	CBF2	P32504	956 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	TEF4	P36008	412 aa	Known RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	LRP1	P38801	184 aa	Known RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	SSP120	P39931	234 aa	Known RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	KHA1	P40309	873 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	YIL108W	P40483	696 aa	Known RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	ROG3	P43602	733 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	SCW11	P53189	542 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	YGR250C	P53316	781 aa	Known RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	DUS1	P53759	423 aa	Known RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
SOF1	YLL011W	YDR286C	Q05530	114 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	SYT1	Q06836	1226 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	DIN7	Q12086	430 aa		4.81	□□□□□ -1.64
SOF1	YLL011W	SNQ2	P32568	1501 aa	Known RBP	4.81	□□□□□ -1.64
SOF1	YLL011W	SPO14	P36126	1683 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	TRM3	Q07527	1436 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	ADE3	P07245	946 aa	Known RBP	4.8	□□□□□ -1.64
SOF1	YLL011W	PDC5	P16467	563 aa	Known RBP	4.8	□□□□□ -1.64
SOF1	YLL011W	KRR1	P25586	316 aa	Predicted RBP	4.8	□□□□□ -1.64
SOF1	YLL011W	BRF1	P29056	596 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	NPL6	P32832	435 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	CNS1	P33313	385 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	MRPL36	P36531	177 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	GLY1	P37303	387 aa	Known RBP	4.8	□□□□□ -1.64
SOF1	YLL011W	MIP6	P38760	659 aa	Known RBP	4.8	□□□□□ -1.64
SOF1	YLL011W	CCT3	P39077	534 aa	Known RBP	4.8	□□□□□ -1.64
SOF1	YLL011W	CIR1	P42940	261 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	YFR016C	P43597	1233 aa	Known RBP	4.8	□□□□□ -1.64
SOF1	YLL011W	SET2	P46995	733 aa	Known RBP	4.8	□□□□□ -1.64
SOF1	YLL011W	ENP2	P48234	707 aa	Known RBP	4.8	□□□□□ -1.64
SOF1	YLL011W	ALT1	P52893	592 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	DSE4	P53753	1117 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	YNR071C	P53757	342 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	EAR1	Q03212	550 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	YMR155W	Q03795	547 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	SSL1	Q04673	461 aa	Predicted RBP	4.8	□□□□□ -1.64
SOF1	YLL011W	STP4	Q07351	490 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	RSB1	Q08417	382 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	SVS1	Q12254	260 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	PGA3	Q12746	312 aa	Known RBP	4.8	□□□□□ -1.64
SOF1	YLL011W	ULS1	Q08562	1619 aa		4.8	□□□□□ -1.64
SOF1	YLL011W	MET17	P06106	444 aa		4.79	□□□□□ -1.64
SOF1	YLL011W	RPS4A	P0CX35	261 aa	Known RBP	4.79	□□□□□ -1.64
SOF1	YLL011W	RPS4B	P0CX36	261 aa	Known RBP	4.79	□□□□□ -1.64
SOF1	YLL011W	CKA1	P15790	372 aa		4.79	□□□□□ -1.64
SOF1	YLL011W	PDX1	P16451	410 aa		4.79	□□□□□ -1.64
SOF1	YLL011W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.79	□□□□□ -1.64	not detected
SOF1	YLL011W	OLE1	P21147	510 aa	Known RBP	4.79	□□□□□ -1.64
SOF1	YLL011W	RIT1	P23796	513 aa		4.79	□□□□□ -1.64
SOF1	YLL011W	ORC2	P32833	620 aa		4.79	□□□□□ -1.64
SOF1	YLL011W	SRP101	P32916	621 aa		4.79	□□□□□ -1.64
SOF1	YLL011W	SAS3	P34218	831 aa		4.79	□□□□□ -1.64
SOF1	YLL011W	LRG1	P35688	1017 aa		4.79	□□□□□ -1.64
SOF1	YLL011W	APN2	P38207	520 aa		4.79	□□□□□ -1.64
SOF1	YLL011W	RXT2	P38255	430 aa		4.79	□□□□□ -1.64
SOF1	YLL011W	CEM1	P39525	442 aa		4.79	□□□□□ -1.64
SOF1	YLL011W	NPR2	P39923	615 aa		4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms