RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W SNU66Q12420 587 aaPredicted RBP3.39□□□□□ -1.87
USE1YGL098W CEX1Q12453 761 aa3.39□□□□□ -1.87
USE1YGL098W YOR111WQ99210 232 aa3.39□□□□□ -1.87
USE1YGL098W SPO14P36126 1683 aa3.39□□□□□ -1.87
USE1YGL098W NTE1Q04958 1679 aa3.39□□□□□ -1.87
USE1YGL098W RSF2P46974 1380 aa3.38□□□□□ -1.87
USE1YGL098W TY1B-HO13535 1793 aa3.38□□□□□ -1.87
USE1YGL098W TY1B-DR5P0C2I2 1755 aa3.38□□□□□ -1.87
USE1YGL098W TY1B-DR6P0C2I3 1755 aa3.38□□□□□ -1.87
USE1YGL098W TY1B-LR2P0C2I5 1755 aa3.38□□□□□ -1.87
USE1YGL098W TY1B-LR3P0C2I6 1755 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W TY1B-PR1P0C2I9 1755 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W TY1B-PR2P0C2J0 1756 aa3.38□□□□□ -1.87
USE1YGL098W TY1B-PR3P0C2J1 1755 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W TY1B-JR1P47098 1755 aa3.38□□□□□ -1.87
USE1YGL098W TY1B-ML2Q03434 1755 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W TY1B-ER1Q03612 1755 aa3.38□□□□□ -1.87
USE1YGL098W TY1B-ML1Q04711 1755 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W TY1B-GR2Q12269 1755 aa3.38□□□□□ -1.87
USE1YGL098W TY1B-OLQ12273 1755 aa3.38□□□□□ -1.87
USE1YGL098W TY1B-PLQ12414 1755 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W ILS1P09436 1072 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W MPH2P0CD99 609 aa3.38□□□□□ -1.87
USE1YGL098W RPS6AP0CX37 236 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W RPS6BP0CX38 236 aaPredicted RBP3.38□□□□□ -1.87
USE1YGL098W MRP7P12687 371 aa3.38□□□□□ -1.87
USE1YGL098W ATR1P13090 542 aa3.38□□□□□ -1.87
USE1YGL098W YAK1P14680 807 aa3.38□□□□□ -1.87
USE1YGL098W PRP6P19735 899 aaPredicted RBP3.38□□□□□ -1.87
USE1YGL098W PEX1P24004 1043 aa3.38□□□□□ -1.87
USE1YGL098W SPB1P25582 841 aaPredicted RBP3.38□□□□□ -1.87
USE1YGL098W ADY2P25613 283 aa3.38□□□□□ -1.87
USE1YGL098W CRM1P30822 1084 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W ZIP1P31111 875 aa3.38□□□□□ -1.87
USE1YGL098W PLC1P32383 869 aa3.38□□□□□ -1.87
USE1YGL098W UTR2P32623 467 aa3.38□□□□□ -1.87
USE1YGL098W PEP12P32854 288 aa3.38□□□□□ -1.87
USE1YGL098W STE5P32917 917 aa3.38□□□□□ -1.87
USE1YGL098W RPT5P33297 434 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W CPR5P35176 225 aa3.38□□□□□ -1.87
USE1YGL098W SPC42P36094 363 aa3.38□□□□□ -1.87
USE1YGL098W UIP5P36137 443 aa3.38□□□□□ -1.87
USE1YGL098W ATP3P38077 311 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W APD1P38281 316 aa3.38□□□□□ -1.87
USE1YGL098W MIP6P38760 659 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W ERP5P38819 212 aa3.38□□□□□ -1.87
USE1YGL098W NMD3P38861 518 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W NPT1P39683 429 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W VFA1P40080 203 aa3.38□□□□□ -1.87
USE1YGL098W GLG2P47011 380 aa3.38□□□□□ -1.87
USE1YGL098W SSN8P47821 323 aa3.38□□□□□ -1.87
USE1YGL098W TRF5P48561 642 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W ALT1P52893 592 aa3.38□□□□□ -1.87
USE1YGL098W TAF6P53040 516 aa3.38□□□□□ -1.87
USE1YGL098W RMR1P53060 241 aa3.38□□□□□ -1.87
USE1YGL098W ZIP2P53061 704 aa3.38□□□□□ -1.87
USE1YGL098W CUE3P53137 624 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W YGL108CP53139 140 aa3.38□□□□□ -1.87
USE1YGL098W CGR1P53188 120 aa3.38□□□□□ -1.87
USE1YGL098W YGR016WP53209 190 aa3.38□□□□□ -1.87
USE1YGL098W MRPS35P53292 345 aa3.38□□□□□ -1.87
USE1YGL098W ELA1P53861 379 aaPredicted RBP3.38□□□□□ -1.87
USE1YGL098W ALD6P54115 500 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W REX2P54964 269 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W CEG1Q01159 459 aaPredicted RBP3.38□□□□□ -1.87
USE1YGL098W SLU7Q02775 382 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W PNG1Q02890 363 aa3.38□□□□□ -1.87
USE1YGL098W EEB1Q02891 456 aa3.38□□□□□ -1.87
USE1YGL098W UME1Q03010 460 aa3.38□□□□□ -1.87
USE1YGL098W YML083CQ04526 418 aa3.38□□□□□ -1.87
USE1YGL098W FMP42Q04991 504 aa3.38□□□□□ -1.87
USE1YGL098W ARP9Q05123 467 aa3.38□□□□□ -1.87
USE1YGL098W ENT2Q05785 613 aa3.38□□□□□ -1.87
USE1YGL098W ECI1Q05871 280 aa3.38□□□□□ -1.87
USE1YGL098W DCS1Q06151 350 aa3.38□□□□□ -1.87
USE1YGL098W YCS4Q06156 1176 aa3.38□□□□□ -1.87
USE1YGL098W ATG13Q06628 738 aa3.38□□□□□ -1.87
USE1YGL098W YDL114WQ07530 308 aa3.38□□□□□ -1.87
USE1YGL098W GPI13Q07830 1017 aa3.38□□□□□ -1.87
USE1YGL098W ALE1Q08548 619 aa3.38□□□□□ -1.87
USE1YGL098W YOR352WQ08816 343 aa3.38□□□□□ -1.87
USE1YGL098W VPS54Q12071 889 aa3.38□□□□□ -1.87
USE1YGL098W ACF2Q12168 779 aa3.38□□□□□ -1.87
USE1YGL098W MED4Q12343 284 aa3.38□□□□□ -1.87
USE1YGL098W MDM20Q12387 796 aaKnown RBP3.38□□□□□ -1.87
USE1YGL098W YIL002W-AQ3E7Z5 69 aa3.38□□□□□ -1.87
USE1YGL098W BCK1Q01389 1478 aa3.38□□□□□ -1.87
USE1YGL098W NUP192P47054 1683 aa3.38□□□□□ -1.87
USE1YGL098W TEF1P02994 458 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W RPS3P05750 240 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W SPS1P08458 490 aa3.37□□□□□ -1.87
USE1YGL098W KAR1P11927 433 aa3.37□□□□□ -1.87
USE1YGL098W STI1P15705 589 aaKnown RBP RIP-Chip data3.37□□□□□ -1.87not detected
USE1YGL098W PDC5P16467 563 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W HSP60P19882 572 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W DBP5P20449 482 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W VPS3P23643 1011 aa3.37□□□□□ -1.87
USE1YGL098W CLB3P24870 427 aa3.37□□□□□ -1.87
USE1YGL098W PDC6P26263 563 aaKnown RBP3.37□□□□□ -1.87
USE1YGL098W HXT3P32466 567 aaKnown RBP3.37□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 19 ms