RNA–Protein interactions for RNA: YGL006W

PMC1, Transcript of Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions, yeast

Gene PMC1, Length 3,522 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PMC1	YGL006W	ADE13	Q05911	482 aa	Known RBP	4.37	□□□□□ -1.71
PMC1	YGL006W	MCH5	Q08777	521 aa		4.37	□□□□□ -1.71
PMC1	YGL006W	YEL077C	Q3E7X8	1277 aa		4.37	□□□□□ -1.71
PMC1	YGL006W	TDP1	P38319	544 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	KHA1	P40309	873 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	GPD2	P41911	440 aa	Known RBP	4.36	□□□□□ -1.71
PMC1	YGL006W	PUS6	P53294	404 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	SPC2	Q04969	178 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	REC8	Q12188	680 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	LDB17	Q12342	491 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	PGK1	P00560	416 aa	Known RBP	4.36	□□□□□ -1.71
PMC1	YGL006W	SNF1	P06782	633 aa	Known RBP	4.36	□□□□□ -1.71
PMC1	YGL006W	ADE3	P07245	946 aa	Known RBP	4.36	□□□□□ -1.71
PMC1	YGL006W	HEM15	P16622	393 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	THR1	P17423	357 aa	Known RBP	4.36	□□□□□ -1.71
PMC1	YGL006W	CCR4	P31384	837 aa	Known RBP	4.36	□□□□□ -1.71
PMC1	YGL006W	IRE1	P32361	1115 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.36	□□□□□ -1.71	not detected
PMC1	YGL006W	GEF1	P37020	779 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	PIK1	P39104	1066 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	UTP18	P40362	594 aa	Predicted RBP	4.36	□□□□□ -1.71
PMC1	YGL006W	HPM1	P40481	377 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	VMA13	P41807	478 aa	Known RBP	4.36	□□□□□ -1.71
PMC1	YGL006W	FAR7	P43592	221 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	STB2	P46679	850 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	YMR209C	Q03648	457 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	RSM24	Q03976	319 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	SEC10	Q06245	871 aa		4.36	□□□□□ -1.71
PMC1	YGL006W	PEP5	P12868	1029 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	ATG19	P35193	415 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	ETR1	P38071	380 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	APM2	P38700	605 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	HSH155	P49955	971 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	IMD4	P50094	524 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	YGL108C	P53139	140 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	PEX8	P53248	589 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	HXT15	P54854	567 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	YML020W	Q03722	664 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	HMO1	Q03973	246 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.35	□□□□□ -1.71	not detected
PMC1	YGL006W	APC9	Q12107	265 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	MDM20	Q12387	796 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	RPN13	O13563	156 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	ILS1	P09436	1072 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	SAN1	P22470	610 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	URA7	P28274	579 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	EUG1	P32474	517 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	HBS1	P32769	611 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	RAD54	P32863	898 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	RPS0A	P32905	252 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	DBP7	P36120	742 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	SAH1	P39954	449 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	RLP7	P40693	322 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	YGL176C	P46945	554 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	MAD3	P47074	515 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	RTS3	P53289	263 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	ADI1	Q03677	179 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	ATG16	Q03818	150 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	YMR111C	Q04461	462 aa	Predicted RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	RRP9	Q06506	573 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	CDC73	Q06697	393 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	THI20	Q08224	551 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	UIP4	Q08926	304 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	THP3	Q12049	470 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	GPR1	Q12361	961 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	YIL177C	P40434	1758 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	YJL225C	P40889	1758 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	UBA1	P22515	1024 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	SYG1	P40528	902 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	DOT5	P40553	215 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	EMC2	P47133	292 aa	Known RBP	4.35	□□□□□ -1.71
PMC1	YGL006W	HST2	P53686	357 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	FUS2	Q05670	677 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	SMC5	Q08204	1093 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	TRE1	Q08919	783 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	ULA1	Q12059	462 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	SPE4	Q12455	300 aa		4.35	□□□□□ -1.71
PMC1	YGL006W	TEF1	P02994	458 aa	Known RBP	4.34	□□□□□ -1.71
PMC1	YGL006W	PUT2	P07275	575 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	PMS1	P14242	873 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	ADE2	P21264	571 aa	Known RBP	4.34	□□□□□ -1.71
PMC1	YGL006W	ADP1	P25371	1049 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	SPR1	P32603	445 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	UGP1	P32861	499 aa	Known RBP	4.34	□□□□□ -1.71
PMC1	YGL006W	PFF1	P38244	976 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	PEP8	P40335	379 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	CHS6	P40955	746 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	NUP84	P52891	726 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	ORC3	P54790	616 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	DAK1	P54838	584 aa	Known RBP	4.34	□□□□□ -1.71
PMC1	YGL006W	CWC15	Q03772	175 aa	Known RBP	4.34	□□□□□ -1.71
PMC1	YGL006W	IVY1	Q04934	453 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	IWR1	Q07532	353 aa	Predicted RBP	4.34	□□□□□ -1.71
PMC1	YGL006W	LOT6	Q07923	191 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	TY4B-H	P0C2J7	1802 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	TY4B-J	P47024	1803 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	RPL6B	P05739	176 aa	Known RBP	4.34	□□□□□ -1.71
PMC1	YGL006W	COR1	P07256	457 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	SLY1	P22213	666 aa		4.34	□□□□□ -1.71
PMC1	YGL006W	LCB1	P25045	558 aa	Known RBP	4.34	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 41.1 ms