RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 TIGD1Q96MW7 591 aa17.23■□□□□ 0.35
SMARCA4-219ENST00000592604 NRDCO43847 1150 aa17.22■□□□□ 0.35
SMARCA4-219ENST00000592604 IMMTQ16891 758 aaKnown RBP17.22■□□□□ 0.35
SMARCA4-219ENST00000592604 ANO1Q5XXA6 986 aa17.22■□□□□ 0.35
SMARCA4-219ENST00000592604 TJP1Q07157 1748 aa17.22■□□□□ 0.35
SMARCA4-219ENST00000592604 H2AFXP16104 143 aaPredicted RBP17.22■□□□□ 0.35
SMARCA4-219ENST00000592604 SYNE3Q6ZMZ3 975 aa17.22■□□□□ 0.35
SMARCA4-219ENST00000592604 NBPF26B4DH59 902 aa17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 PRC1O43663 620 aa17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 ZFYP08048 801 aaPredicted RBP17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 CHRM1P11229 460 aaPredicted RBP17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 NBPF14Q5TI25 921 aa17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 TAF3Q5VWG9 929 aa17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 NBPF10Q6P3W6 841 aaKnown RBP17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 NBPF15Q8N660 670 aa17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 ALS2Q96Q42 1657 aa17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 WDR19Q8NEZ3 1342 aa17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 KLF18A0A0U1RQI7 1052 aa17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 PFKFB1P16118 471 aa17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 KIF23Q02241 960 aaPredicted RBP17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 SYT10Q6XYQ8 523 aa17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 TUBE1Q9UJT0 475 aa17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 NUP188Q5SRE5 1749 aa17.21■□□□□ 0.35
SMARCA4-219ENST00000592604 KIF28PB7ZC32 967 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 FAM193AP78312 1265 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 FANCCQ00597 558 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 HSD3B7Q9H2F3 369 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 COL18A1P39060 1754 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 PKD1L3Q7Z443 1732 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 FGAP02671 866 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 SLC39A14Q15043 492 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 ZNF446Q9NWS9 450 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 GOLGA8BA8MQT2 603 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 BIN1O00499 593 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 CCP110O43303 1012 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 ANTXR2P58335 489 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 CCDC191Q8NCU4 936 aa17.2■□□□□ 0.34
SMARCA4-219ENST00000592604 CABP4P57796 275 aa17.19■□□□□ 0.34
SMARCA4-219ENST00000592604 NCOA7Q8NI08 942 aa17.19■□□□□ 0.34
SMARCA4-219ENST00000592604 ZNF594Q96JF6 807 aaPredicted RBP17.19■□□□□ 0.34
SMARCA4-219ENST00000592604 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.19■□□□□ 0.341e-8■■■■□ 20.8
SMARCA4-219ENST00000592604 WDHD1O75717 1129 aaPredicted RBP17.19■□□□□ 0.34
SMARCA4-219ENST00000592604 HAND2P61296 217 aa17.19■□□□□ 0.34
SMARCA4-219ENST00000592604 ERCC6LQ2NKX8 1250 aa17.19■□□□□ 0.34
SMARCA4-219ENST00000592604 ZNF142P52746 1687 aaPredicted RBP17.19■□□□□ 0.34
SMARCA4-219ENST00000592604 C4AP0C0L4 1744 aa17.19■□□□□ 0.34
SMARCA4-219ENST00000592604 C4BP0C0L5 1744 aa17.19■□□□□ 0.34
SMARCA4-219ENST00000592604 CPLX1O14810 134 aa17.18■□□□□ 0.34
SMARCA4-219ENST00000592604 ETF1P62495 437 aaKnown RBP17.18■□□□□ 0.34
SMARCA4-219ENST00000592604 TTLL7Q6ZT98 887 aa17.18■□□□□ 0.34
SMARCA4-219ENST00000592604 TMX1Q9H3N1 280 aa17.18■□□□□ 0.34
SMARCA4-219ENST00000592604 CEP126Q9P2H0 1117 aa17.18■□□□□ 0.34
SMARCA4-219ENST00000592604 HPSEQ9Y251 543 aa17.18■□□□□ 0.34
SMARCA4-219ENST00000592604 PHLPP2Q6ZVD8 1323 aa17.18■□□□□ 0.34
SMARCA4-219ENST00000592604 FAM237AA0A1B0GTK4 181 aa17.18■□□□□ 0.34
SMARCA4-219ENST00000592604 FKBP4Q02790 459 aaKnown RBP eCLIP17.18■□□□□ 0.34
SMARCA4-219ENST00000592604 CCDC158Q5M9N0 1113 aa17.18■□□□□ 0.34
SMARCA4-219ENST00000592604 PUS3Q9BZE2 481 aaKnown RBP17.18■□□□□ 0.34
SMARCA4-219ENST00000592604 GJB4Q9NTQ9 266 aa17.18■□□□□ 0.34
SMARCA4-219ENST00000592604 LMOD1P29536 600 aaPredicted RBP17.17■□□□□ 0.34
SMARCA4-219ENST00000592604 BMS1Q14692 1282 aaKnown RBP17.17■□□□□ 0.34
SMARCA4-219ENST00000592604 FBXO3Q9UK99 471 aa17.17■□□□□ 0.34
SMARCA4-219ENST00000592604 MROH7-TTC4A0A0A0MT08 1334 aa17.17■□□□□ 0.34
SMARCA4-219ENST00000592604 PPP6R2O75170 966 aa17.17■□□□□ 0.34
SMARCA4-219ENST00000592604 WASHC4Q2M389 1173 aa17.17■□□□□ 0.34
SMARCA4-219ENST00000592604 APPBP2Q92624 585 aa17.17■□□□□ 0.34
SMARCA4-219ENST00000592604 CBFA2T2O43439 604 aa17.17■□□□□ 0.34
SMARCA4-219ENST00000592604 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.17■□□□□ 0.34
SMARCA4-219ENST00000592604 C1orf167Q5SNV9 1468 aa17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 CPDO75976 1380 aa17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 ABCC12Q96J65 1359 aa17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 MYO1BO43795 1136 aa17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 SYKP43405 635 aa17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 RALYLQ86SE5 291 aaKnown RBP17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 CREBRFQ8IUR6 639 aa17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 AKAP2Q9Y2D5 859 aa17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 ATP1A3P13637 1013 aa17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 TTC39AQ5SRH9 613 aa17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 TRIM65Q6PJ69 517 aa17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 LRRN4CLQ8ND94 238 aa17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 XAGE2Q96GT9 111 aa17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 PARP4Q9UKK3 1724 aaKnown RBP17.16■□□□□ 0.34
SMARCA4-219ENST00000592604 ZNF213O14771 459 aa17.15■□□□□ 0.34
SMARCA4-219ENST00000592604 MYH7P12883 1935 aa17.15■□□□□ 0.34
SMARCA4-219ENST00000592604 MARCKSP29966 332 aaPredicted RBP17.15■□□□□ 0.34
SMARCA4-219ENST00000592604 CLCN6P51797 869 aa17.15■□□□□ 0.34
SMARCA4-219ENST00000592604 UBASH3AP57075 661 aa17.15■□□□□ 0.34
SMARCA4-219ENST00000592604 MYL5Q02045 173 aa17.15■□□□□ 0.34
SMARCA4-219ENST00000592604 PTPAQ15257 358 aa17.15■□□□□ 0.34
SMARCA4-219ENST00000592604 FCHSD1Q86WN1 690 aa17.15■□□□□ 0.34
SMARCA4-219ENST00000592604 JMYQ8N9B5 988 aa17.15■□□□□ 0.34
SMARCA4-219ENST00000592604 SYTL4Q96C24 671 aaPredicted RBP17.15■□□□□ 0.34
SMARCA4-219ENST00000592604 SRRTQ9BXP5 876 aaKnown RBP17.15■□□□□ 0.34
SMARCA4-219ENST00000592604 PUS7LQ9H0K6 701 aaKnown RBP17.15■□□□□ 0.34
SMARCA4-219ENST00000592604 NPHP1O15259 732 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 CSB-PGBD3P0DP91 1061 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 HOMER1Q86YM7 354 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 BCCIPQ9P287 314 aaKnown RBP eCLIP17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 FHOD1Q9Y613 1164 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 ADORA1P30542 326 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms