RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 VPS37DQ86XT2 251 aa14.14□□□□□ -0.15
CIITA-209ENST00000573309 KBTBD3Q8NAB2 608 aa14.14□□□□□ -0.15
CIITA-209ENST00000573309 SHANK3Q9BYB0 1731 aa14.14□□□□□ -0.15
CIITA-209ENST00000573309 ERICH4A6NGS2 130 aa14.14□□□□□ -0.15
CIITA-209ENST00000573309 CEP135Q66GS9 1140 aa14.14□□□□□ -0.15
CIITA-209ENST00000573309 KRT222Q8N1A0 295 aa14.14□□□□□ -0.15
CIITA-209ENST00000573309 PIH1D3Q9NQM4 214 aaKnown RBP14.14□□□□□ -0.15
CIITA-209ENST00000573309 PDE8BO95263 885 aa14.14□□□□□ -0.15
CIITA-209ENST00000573309 NTSR2O95665 410 aa14.14□□□□□ -0.15
CIITA-209ENST00000573309 CCT2P78371 535 aaKnown RBP14.14□□□□□ -0.15
CIITA-209ENST00000573309 ME3Q16798 604 aa14.14□□□□□ -0.15
CIITA-209ENST00000573309 LARP1BQ659C4 914 aaKnown RBP14.14□□□□□ -0.15
CIITA-209ENST00000573309 DACT1Q9NYF0 836 aa14.14□□□□□ -0.15
CIITA-209ENST00000573309 GLI3P10071 1580 aa14.14□□□□□ -0.15
CIITA-209ENST00000573309 RBM6P78332 1123 aaKnown RBP14.13□□□□□ -0.15
CIITA-209ENST00000573309 CHRNDQ07001 517 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 TRIM28Q13263 835 aaKnown RBP14.13□□□□□ -0.15
CIITA-209ENST00000573309 MAPK8IP2Q13387 824 aaPredicted RBP14.13□□□□□ -0.15
CIITA-209ENST00000573309 MCMDC2Q4G0Z9 681 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 TFIP11Q9UBB9 837 aaKnown RBP14.13□□□□□ -0.15
CIITA-209ENST00000573309 ZNF609O15014 1411 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 FBXO38Q6PIJ6 1188 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 FAM53CQ9NYF3 392 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 CLIP2Q9UDT6 1046 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 ADAMTS7Q9UKP4 1686 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 ITGB4P16144 1822 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 SMIM22K7EJ46 135 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 CYP21A2P08686 494 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 CCDC152Q4G0S7 254 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 TRAPPC3LQ5T215 181 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 CDC37L1Q7L3B6 337 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 ZNF652Q9Y2D9 606 aa14.13□□□□□ -0.15
CIITA-209ENST00000573309 ARFGEF2Q9Y6D5 1785 aa14.12□□□□□ -0.15
CIITA-209ENST00000573309 ERVV-1B6SEH8 477 aa14.12□□□□□ -0.15
CIITA-209ENST00000573309 RXRAP19793 462 aa14.12□□□□□ -0.15
CIITA-209ENST00000573309 BLOC1S2Q6QNY1 142 aa14.12□□□□□ -0.15
CIITA-209ENST00000573309 KLHL34Q8N239 644 aa14.12□□□□□ -0.15
CIITA-209ENST00000573309 ZNF397Q8NF99 534 aaPredicted RBP14.12□□□□□ -0.15
CIITA-209ENST00000573309 TNMDQ9H2S6 317 aa14.12□□□□□ -0.15
CIITA-209ENST00000573309 AKAP2Q9Y2D5 859 aa14.12□□□□□ -0.15
CIITA-209ENST00000573309 DOT1LQ8TEK3 1739 aa14.12□□□□□ -0.15
CIITA-209ENST00000573309 RRP12Q5JTH9 1297 aaKnown RBP14.12□□□□□ -0.15
CIITA-209ENST00000573309 OLFM4Q6UX06 510 aa14.12□□□□□ -0.15
CIITA-209ENST00000573309 KRT27Q7Z3Y8 459 aa14.12□□□□□ -0.15
CIITA-209ENST00000573309 DNAJC25Q9H1X3 360 aa14.12□□□□□ -0.15
CIITA-209ENST00000573309 MAST3O60307 1309 aa14.12□□□□□ -0.15
CIITA-209ENST00000573309 EPB41L2O43491 1005 aaKnown RBP14.11□□□□□ -0.15
CIITA-209ENST00000573309 NECTIN1Q15223 517 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 ELF2Q15723 593 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 TPCN1Q9ULQ1 816 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 MAGEB6Q8N7X4 407 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 TDRD7Q8NHU6 1098 aaKnown RBP14.11□□□□□ -0.15
CIITA-209ENST00000573309 MAP4K1Q92918 833 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 BRF1Q92994 677 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 USP42Q9H9J4 1324 aaKnown RBP14.11□□□□□ -0.15
CIITA-209ENST00000573309 PLCH1Q4KWH8 1693 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 GOLGA6L4A6NEF3 574 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 PRKAB2O43741 272 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 APBA3O96018 575 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 RASGRF1Q13972 1273 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 NCOA5Q9HCD5 579 aaKnown RBP14.11□□□□□ -0.15
CIITA-209ENST00000573309 ZNF446Q9NWS9 450 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 LRP2BPQ9P2M1 347 aa14.11□□□□□ -0.15
CIITA-209ENST00000573309 ABCC12Q96J65 1359 aa14.1□□□□□ -0.15
CIITA-209ENST00000573309 RNF113AO15541 343 aaKnown RBP14.1□□□□□ -0.15
CIITA-209ENST00000573309 GUCY1B3Q02153 619 aa14.1□□□□□ -0.15
CIITA-209ENST00000573309 STOX1Q6ZVD7 989 aa14.1□□□□□ -0.15
CIITA-209ENST00000573309 ANKRD18AQ8IVF6 992 aa14.1□□□□□ -0.15
CIITA-209ENST00000573309 MYH14Q7Z406 1995 aaKnown RBP14.1□□□□□ -0.15
CIITA-209ENST00000573309 KRT85P78386 507 aa14.1□□□□□ -0.15
CIITA-209ENST00000573309 CEBPZQ03701 1054 aaKnown RBP14.1□□□□□ -0.15
CIITA-209ENST00000573309 LRRC8AQ8IWT6 810 aa14.1□□□□□ -0.15
CIITA-209ENST00000573309 ABCC6O95255 1503 aa14.1□□□□□ -0.15
CIITA-209ENST00000573309 HSPD1P10809 573 aaKnown RBP14.09□□□□□ -0.15
CIITA-209ENST00000573309 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.09□□□□□ -0.15
CIITA-209ENST00000573309 NKX2-3Q8TAU0 364 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 FBXW7Q969H0 707 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 ARMT1Q9H993 441 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 RAI14Q9P0K7 980 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 HMG20BQ9P0W2 317 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 ANKIB1Q9P2G1 1089 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 NR1I2O75469 434 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 ZNF165P49910 485 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 TXNRD3Q86VQ6 643 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 NLRP3Q96P20 1036 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 TRMT1Q9NXH9 659 aaKnown RBP14.09□□□□□ -0.15
CIITA-209ENST00000573309 SPATA31A6Q5VVP1 1343 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 ZNF532Q9HCE3 1301 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 JAK2O60674 1132 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 CAPN2P17655 700 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 APOBRQ0VD83 1088 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 NFIXQ14938 502 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 Q6ZUG5 572 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 TIGD1Q96MW7 591 aa14.09□□□□□ -0.15
CIITA-209ENST00000573309 CCDC66A2RUB6 948 aa14.08□□□□□ -0.15
CIITA-209ENST00000573309 NYAP1Q6ZVC0 841 aa14.08□□□□□ -0.15
CIITA-209ENST00000573309 ZSWIM6Q9HCJ5 1215 aa14.08□□□□□ -0.15
CIITA-209ENST00000573309 GPAA1O43292 621 aa14.08□□□□□ -0.16
CIITA-209ENST00000573309 RPS6KA4O75676 772 aa14.08□□□□□ -0.16
CIITA-209ENST00000573309 PLCD3Q8N3E9 789 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms