RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 CHRNA5P30532 468 aa22.63■■□□□ 1.21
CLN3-233ENST00000568452 ALX1Q15699 326 aa22.63■■□□□ 1.21
CLN3-233ENST00000568452 CC2D2BQ6DHV5 1058 aa22.63■■□□□ 1.21
CLN3-233ENST00000568452 EYA3Q99504 573 aa22.63■■□□□ 1.21
CLN3-233ENST00000568452 ZC3H12CQ9C0D7 883 aaKnown RBP22.63■■□□□ 1.21
CLN3-233ENST00000568452 ATF5Q9Y2D1 282 aaPredicted RBP22.63■■□□□ 1.21
CLN3-233ENST00000568452 COA1Q9GZY4 146 aa22.62■■□□□ 1.21
CLN3-233ENST00000568452 ZMYM6O95789 1325 aa22.62■■□□□ 1.21
CLN3-233ENST00000568452 MAGEB6P1A0A0J9YX57 407 aa22.61■■□□□ 1.21
CLN3-233ENST00000568452 PATL2C9JE40 543 aaKnown RBP22.61■■□□□ 1.21
CLN3-233ENST00000568452 APPP05067 770 aa22.61■■□□□ 1.21
CLN3-233ENST00000568452 RPS6KB1P23443 525 aa22.61■■□□□ 1.21
CLN3-233ENST00000568452 NSUN4Q96CB9 384 aaKnown RBP22.61■■□□□ 1.21
CLN3-233ENST00000568452 TMX3Q96JJ7 454 aa22.61■■□□□ 1.21
CLN3-233ENST00000568452 ALDH8A1Q9H2A2 487 aaPredicted RBP22.61■■□□□ 1.21
CLN3-233ENST00000568452 ARMT1Q9H993 441 aa22.61■■□□□ 1.21
CLN3-233ENST00000568452 CACNA1SQ13698 1873 aa22.61■■□□□ 1.21
CLN3-233ENST00000568452 MAST2Q6P0Q8 1798 aa22.61■■□□□ 1.21
CLN3-233ENST00000568452 POLD1P28340 1107 aa22.6■■□□□ 1.21
CLN3-233ENST00000568452 AK2P54819 239 aa22.6■■□□□ 1.21
CLN3-233ENST00000568452 ANKRD1Q15327 319 aa22.6■■□□□ 1.21
CLN3-233ENST00000568452 NACAP1Q9BZK3 213 aa22.6■■□□□ 1.21
CLN3-233ENST00000568452 TAF6LQ9Y6J9 622 aa22.6■■□□□ 1.21
CLN3-233ENST00000568452 LDHBP07195 334 aaKnown RBP22.6■■□□□ 1.21
CLN3-233ENST00000568452 MECOMQ03112 1051 aa22.6■■□□□ 1.21
CLN3-233ENST00000568452 GRIPAP1Q4V328 841 aa22.6■■□□□ 1.21
CLN3-233ENST00000568452 DZIP1Q86YF9 867 aaKnown RBP22.6■■□□□ 1.21
CLN3-233ENST00000568452 TBC1D22AQ8WUA7 517 aa22.6■■□□□ 1.21
CLN3-233ENST00000568452 ZNF213O14771 459 aa22.59■■□□□ 1.21
CLN3-233ENST00000568452 GSTO1P78417 241 aa22.59■■□□□ 1.21
CLN3-233ENST00000568452 TTLL5Q6EMB2 1281 aa22.59■■□□□ 1.21
CLN3-233ENST00000568452 MIGA1Q8NAN2 632 aa22.59■■□□□ 1.21
CLN3-233ENST00000568452 CHMP5Q9NZZ3 219 aa22.59■■□□□ 1.21
CLN3-233ENST00000568452 CIZ1Q9ULV3 898 aaPredicted RBP22.59■■□□□ 1.21
CLN3-233ENST00000568452 LIMCH1Q9UPQ0 1083 aa22.59■■□□□ 1.21
CLN3-233ENST00000568452 E7EWF7 191 aa22.58■■□□□ 1.21
CLN3-233ENST00000568452 CPA1P15085 419 aa22.58■■□□□ 1.21
CLN3-233ENST00000568452 PRDX5P30044 214 aa22.58■■□□□ 1.21
CLN3-233ENST00000568452 OLFM4Q6UX06 510 aa22.58■■□□□ 1.21
CLN3-233ENST00000568452 LCORLQ8N3X6 602 aa22.58■■□□□ 1.21
CLN3-233ENST00000568452 SLC4A4Q9Y6R1 1079 aa22.58■■□□□ 1.21
CLN3-233ENST00000568452 FAM205AQ6ZU69 1335 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 CCDC88AQ3V6T2 1871 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 RIMBP2O15034 1052 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 CUL4AQ13619 759 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 IFNL3Q8IZI9 196 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 ZSCAN31Q96LW9 406 aaPredicted RBP22.57■■□□□ 1.2
CLN3-233ENST00000568452 NAPBQ9H115 298 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 SLX4Q8IY92 1834 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 DLEC1Q9Y238 1755 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 LDHCP07864 332 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 ADGRA1Q86SQ6 560 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 TTLL6Q8N841 843 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 C7orf43Q8WVR3 580 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 RIOK1Q9BRS2 568 aaKnown RBP22.57■■□□□ 1.2
CLN3-233ENST00000568452 RTFDC1Q9BY42 306 aaPredicted RBP22.57■■□□□ 1.2
CLN3-233ENST00000568452 CWC22Q9HCG8 908 aaKnown RBP22.57■■□□□ 1.2
CLN3-233ENST00000568452 JAG2Q9Y219 1238 aa22.57■■□□□ 1.2
CLN3-233ENST00000568452 GSG1L2A8MUP6 293 aa22.56■■□□□ 1.2
CLN3-233ENST00000568452 G3V3G9 751 aa22.56■■□□□ 1.2
CLN3-233ENST00000568452 DCAF8Q5TAQ9 597 aa22.56■■□□□ 1.2
CLN3-233ENST00000568452 STOX1Q6ZVD7 989 aa22.56■■□□□ 1.2
CLN3-233ENST00000568452 NOL8Q76FK4 1167 aaKnown RBP22.56■■□□□ 1.2
CLN3-233ENST00000568452 SUPT20HQ8NEM7 779 aa22.56■■□□□ 1.2
CLN3-233ENST00000568452 ZNF384Q8TF68 577 aa22.56■■□□□ 1.2
CLN3-233ENST00000568452 INTS4Q96HW7 963 aaKnown RBP22.56■■□□□ 1.2
CLN3-233ENST00000568452 DDIT3P35638 169 aa22.55■■□□□ 1.2
CLN3-233ENST00000568452 DHX32Q7L7V1 743 aaKnown RBP22.55■■□□□ 1.2
CLN3-233ENST00000568452 SH2B1Q9NRF2 756 aaPredicted RBP22.55■■□□□ 1.2
CLN3-233ENST00000568452 KIF13BQ9NQT8 1826 aa22.55■■□□□ 1.2
CLN3-233ENST00000568452 HAND2P61296 217 aa22.54■■□□□ 1.2
CLN3-233ENST00000568452 TGFB2P61812 414 aa22.54■■□□□ 1.2
CLN3-233ENST00000568452 KIAA1551Q9HCM1 1747 aa22.54■■□□□ 1.2
CLN3-233ENST00000568452 EPB41L4AQ9HCS5 686 aaPredicted RBP22.54■■□□□ 1.2
CLN3-233ENST00000568452 FOXD4L1Q9NU39 408 aa22.54■■□□□ 1.2
CLN3-233ENST00000568452 TDO2P48775 406 aa22.53■■□□□ 1.2
CLN3-233ENST00000568452 GIMAP6Q6P9H5 292 aa22.53■■□□□ 1.2
CLN3-233ENST00000568452 CERS3Q8IU89 383 aa22.53■■□□□ 1.2
CLN3-233ENST00000568452 SLF2Q8IX21 1173 aa22.53■■□□□ 1.2
CLN3-233ENST00000568452 NOL10Q9BSC4 688 aaKnown RBP22.53■■□□□ 1.2
CLN3-233ENST00000568452 SPON1Q9HCB6 807 aa22.53■■□□□ 1.2
CLN3-233ENST00000568452 SUGT1Q9Y2Z0 365 aa22.53■■□□□ 1.2
CLN3-233ENST00000568452 A0A0G2JLW4 131 aa22.53■■□□□ 1.2
CLN3-233ENST00000568452 TRDNQ13061 729 aa22.53■■□□□ 1.2
CLN3-233ENST00000568452 MFSD14BQ5SR56 506 aa22.53■■□□□ 1.2
CLN3-233ENST00000568452 PODNQ7Z5L7 613 aa22.53■■□□□ 1.2
CLN3-233ENST00000568452 NCOA7Q8NI08 942 aa22.53■■□□□ 1.2
CLN3-233ENST00000568452 CRNKL1Q9BZJ0 848 aaKnown RBP22.53■■□□□ 1.2
CLN3-233ENST00000568452 ZNF219Q9P2Y4 722 aaPredicted RBP22.53■■□□□ 1.2
CLN3-233ENST00000568452 PRKAB2O43741 272 aa22.52■■□□□ 1.2
CLN3-233ENST00000568452 DPEP1P16444 411 aa22.52■■□□□ 1.2
CLN3-233ENST00000568452 DYNLL1P63167 89 aaKnown RBP22.52■■□□□ 1.2
CLN3-233ENST00000568452 GTF2IP78347 998 aa22.52■■□□□ 1.2
CLN3-233ENST00000568452 RALYLQ86SE5 291 aaKnown RBP22.52■■□□□ 1.2
CLN3-233ENST00000568452 SGIP1Q9BQI5 828 aa22.52■■□□□ 1.2
CLN3-233ENST00000568452 LAMA4Q16363 1823 aa22.51■■□□□ 1.19
CLN3-233ENST00000568452 BAG3O95817 575 aa22.51■■□□□ 1.19
CLN3-233ENST00000568452 CCDC93Q567U6 631 aa22.51■■□□□ 1.19
CLN3-233ENST00000568452 RTKN2Q8IZC4 609 aa22.51■■□□□ 1.19
CLN3-233ENST00000568452 PTGER2P43116 358 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms