RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MCAMP43121 646 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 EVCP57679 992 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 CCZ1BP86790 482 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 CCZ1P86791 482 aaPredicted RBP8.74□□□□□ -1.01
LIMA1-213ENST00000552720 MKRN4PQ13434 485 aaPredicted RBP8.74□□□□□ -1.01
LIMA1-213ENST00000552720 TCIRG1Q13488 830 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 SF3A1Q15459 793 aaKnown RBP8.74□□□□□ -1.01
LIMA1-213ENST00000552720 ADALQ6DHV7 355 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 INCENPQ9NQS7 918 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 ANO10Q9NW15 660 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 RTEL1Q9NZ71 1219 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 CPDO75976 1380 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 RIC1Q4ADV7 1423 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 ERVV-2B6SEH9 535 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 CAVIN2O95810 425 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 MARCKSP29966 332 aaPredicted RBP8.74□□□□□ -1.01
LIMA1-213ENST00000552720 CACNB1Q02641 598 aaPredicted RBP8.74□□□□□ -1.01
LIMA1-213ENST00000552720 TAF7LQ5H9L4 462 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 DNAJC10Q8IXB1 793 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 PROM2Q8N271 834 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 FBXO18Q8NFZ0 1043 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 SYTL4Q96C24 671 aaPredicted RBP8.74□□□□□ -1.01
LIMA1-213ENST00000552720 ATG3Q9NT62 314 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 ASAP1Q9ULH1 1129 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 ITGB4P16144 1822 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 MROH7-TTC4A0A0A0MT08 1334 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 COL5A2P05997 1499 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-213ENST00000552720 SMTNL1A8MU46 457 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 HLFQ16534 295 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 MYSM1Q5VVJ2 828 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 CYB5R4Q7L1T6 521 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 TBC1D10CQ8IV04 446 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 CEP57L1Q8IYX8 460 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.73□□□□□ -1.01
LIMA1-213ENST00000552720 APPBP2Q92624 585 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 GREM2Q9H772 168 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.73□□□□□ -1.01
LIMA1-213ENST00000552720 V9GYY5 206 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-213ENST00000552720 NUP98P52948 1817 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 ZNF213O14771 459 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 CPLX1O14810 134 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 SPTLC2O15270 562 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 WDHD1O75717 1129 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-213ENST00000552720 PTPN21Q16825 1174 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 CEP135Q66GS9 1140 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 RALYLQ86SE5 291 aaKnown RBP8.73□□□□□ -1.01
LIMA1-213ENST00000552720 NCOA7Q8NI08 942 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 PHKBQ93100 1093 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 KIAA1468Q9P260 1216 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 CTNNA3Q9UI47 895 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 PRDM4Q9UKN5 801 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 TNS2Q63HR2 1409 aa8.73□□□□□ -1.01
LIMA1-213ENST00000552720 IL2RBP14784 551 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 KIF23Q02241 960 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-213ENST00000552720 IFIT5Q13325 482 aaKnown RBP8.72□□□□□ -1.01
LIMA1-213ENST00000552720 METTL24Q5JXM2 366 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 AXDND1Q5T1B0 1012 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-213ENST00000552720 ATL3Q6DD88 541 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 CADPS2Q86UW7 1296 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 FBXL16Q8N461 479 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 MYL10Q9BUA6 226 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 XPO4Q9C0E2 1151 aaKnown RBP8.72□□□□□ -1.01
LIMA1-213ENST00000552720 AKAP2Q9Y2D5 859 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 A0A1W2PQ27 194 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 A0A1W2PQ64 194 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 A0A1W2PQD8 194 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 ZNF202O95125 648 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 PFKFB1P16118 471 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 CDC27P30260 824 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 RBM6P78332 1123 aaKnown RBP8.72□□□□□ -1.01
LIMA1-213ENST00000552720 NKX1-1Q15270 411 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-213ENST00000552720 SLC9C2Q5TAH2 1124 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 LDHAL6AQ6ZMR3 332 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 BRINP3Q76B58 766 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 CCDC112Q8NEF3 446 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 PIH1D3Q9NQM4 214 aaKnown RBP8.72□□□□□ -1.01
LIMA1-213ENST00000552720 POLR3EQ9NVU0 708 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 IFNKQ9P0W0 207 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 RIPOR2Q9Y4F9 1068 aa8.72□□□□□ -1.01
LIMA1-213ENST00000552720 B4E1Z4 1266 aa8.71□□□□□ -1.01
LIMA1-213ENST00000552720 SNAP23O00161 211 aa8.71□□□□□ -1.01
LIMA1-213ENST00000552720 IDH1O75874 414 aaKnown RBP8.71□□□□□ -1.01
LIMA1-213ENST00000552720 SMC2O95347 1197 aa8.71□□□□□ -1.01
LIMA1-213ENST00000552720 APPP05067 770 aa8.71□□□□□ -1.01
LIMA1-213ENST00000552720 PCCAP05165 728 aaPredicted RBP8.71□□□□□ -1.01
LIMA1-213ENST00000552720 CSF1RP07333 972 aa8.71□□□□□ -1.01
LIMA1-213ENST00000552720 ZFYP08048 801 aaPredicted RBP8.71□□□□□ -1.01
LIMA1-213ENST00000552720 ZSCAN20P17040 1043 aaPredicted RBP8.71□□□□□ -1.01
LIMA1-213ENST00000552720 ITGA6P23229 1130 aa8.71□□□□□ -1.01
LIMA1-213ENST00000552720 ANO1Q5XXA6 986 aa8.71□□□□□ -1.01
LIMA1-213ENST00000552720 NYAP1Q6ZVC0 841 aa8.71□□□□□ -1.01
LIMA1-213ENST00000552720 SMAP1Q8IYB5 467 aaPredicted RBP8.71□□□□□ -1.01
LIMA1-213ENST00000552720 HELBQ8NG08 1087 aaPredicted RBP8.71□□□□□ -1.01
LIMA1-213ENST00000552720 ANKRD36CQ5JPF3 1778 aa8.71□□□□□ -1.01
LIMA1-213ENST00000552720 ABCA3Q99758 1704 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 DCCP43146 1447 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 YEATS4O95619 227 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 ATP1A3P13637 1013 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 ADD2P35612 726 aa8.71□□□□□ -1.02
LIMA1-213ENST00000552720 PHKA1P46020 1223 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms