RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 EXOSC6Q5RKV6 272 aaKnown RBP8.64□□□□□ -1.03
VPS50-213ENST00000477572 NBPF11Q86T75 865 aa8.64□□□□□ -1.03
VPS50-213ENST00000477572 CLEC10AQ8IUN9 316 aa8.64□□□□□ -1.03
VPS50-213ENST00000477572 NRSN2Q9GZP1 204 aa8.64□□□□□ -1.03
VPS50-213ENST00000477572 CYP4F12Q9HCS2 524 aa8.64□□□□□ -1.03
VPS50-213ENST00000477572 TMEM238LA0A1B0GVL6 79 aa8.63□□□□□ -1.03
VPS50-213ENST00000477572 POU4F3Q15319 338 aa8.63□□□□□ -1.03
VPS50-213ENST00000477572 RNF43Q68DV7 783 aa8.63□□□□□ -1.03
VPS50-213ENST00000477572 SMG8Q8ND04 991 aaKnown RBP8.63□□□□□ -1.03
VPS50-213ENST00000477572 FAM83CQ9BQN1 747 aa8.63□□□□□ -1.03
VPS50-213ENST00000477572 TRIM56Q9BRZ2 755 aaKnown RBP8.63□□□□□ -1.03
VPS50-213ENST00000477572 TIAF1O95411 115 aa8.62□□□□□ -1.03
VPS50-213ENST00000477572 B3GALT4O96024 378 aa8.62□□□□□ -1.03
VPS50-213ENST00000477572 CYP11A1P05108 521 aa8.62□□□□□ -1.03
VPS50-213ENST00000477572 ITPKAP23677 461 aa8.62□□□□□ -1.03
VPS50-213ENST00000477572 USP11P51784 963 aa8.62□□□□□ -1.03
VPS50-213ENST00000477572 FBLIM1Q8WUP2 373 aa8.62□□□□□ -1.03
VPS50-213ENST00000477572 ALKBH8Q96BT7 664 aaKnown RBP8.62□□□□□ -1.03
VPS50-213ENST00000477572 SUGCTQ9HAC7 445 aa8.62□□□□□ -1.03
VPS50-213ENST00000477572 PNMA6FA0A0J9YX94 578 aa8.61□□□□□ -1.03
VPS50-213ENST00000477572 GSC2O15499 205 aa8.61□□□□□ -1.03
VPS50-213ENST00000477572 MED26O95402 600 aa8.61□□□□□ -1.03
VPS50-213ENST00000477572 FCGRTP55899 365 aa8.61□□□□□ -1.03
VPS50-213ENST00000477572 PLCB3Q01970 1234 aa8.61□□□□□ -1.03
VPS50-213ENST00000477572 AKAP4Q5JQC9 854 aa8.61□□□□□ -1.03
VPS50-213ENST00000477572 CDPF1Q6NVV7 123 aa8.61□□□□□ -1.03
VPS50-213ENST00000477572 ZDHHC13Q8IUH4 622 aa8.61□□□□□ -1.03
VPS50-213ENST00000477572 GLIS3Q8NEA6 775 aa8.61□□□□□ -1.03
VPS50-213ENST00000477572 MFSD14AQ96MC6 490 aa8.61□□□□□ -1.03
VPS50-213ENST00000477572 ZC3H12CQ9C0D7 883 aaKnown RBP8.61□□□□□ -1.03
VPS50-213ENST00000477572 PCMTD2Q9NV79 361 aa8.61□□□□□ -1.03
VPS50-213ENST00000477572 NLRP2Q9NX02 1062 aa8.61□□□□□ -1.03
VPS50-213ENST00000477572 SOX4Q06945 474 aaPredicted RBP8.6□□□□□ -1.03
VPS50-213ENST00000477572 FAAP100Q0VG06 881 aa8.6□□□□□ -1.03
VPS50-213ENST00000477572 SLC51AQ86UW1 340 aa8.6□□□□□ -1.03
VPS50-213ENST00000477572 FBXL6Q8N531 539 aa8.6□□□□□ -1.03
VPS50-213ENST00000477572 C2CD4AQ8NCU7 369 aaPredicted RBP8.6□□□□□ -1.03
VPS50-213ENST00000477572 SHKBP1Q8TBC3 707 aa8.6□□□□□ -1.03
VPS50-213ENST00000477572 DBNDD2Q9BQY9 259 aa8.6□□□□□ -1.03
VPS50-213ENST00000477572 CORO1BQ9BR76 489 aa8.6□□□□□ -1.03
VPS50-213ENST00000477572 RAD18Q9NS91 495 aa8.6□□□□□ -1.03
VPS50-213ENST00000477572 WDR64B1ANS9 1081 aa8.59□□□□□ -1.03
VPS50-213ENST00000477572 ADH5P11766 374 aa8.59□□□□□ -1.03
VPS50-213ENST00000477572 PDE3AQ14432 1141 aa8.59□□□□□ -1.03
VPS50-213ENST00000477572 DSC3Q14574 896 aa8.59□□□□□ -1.03
VPS50-213ENST00000477572 NFKBIBQ15653 356 aa8.59□□□□□ -1.03
VPS50-213ENST00000477572 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.59□□□□□ -1.03
VPS50-213ENST00000477572 PRPF40BQ6NWY9 871 aaKnown RBP8.59□□□□□ -1.03
VPS50-213ENST00000477572 DTHD1Q6ZMT9 781 aa8.59□□□□□ -1.03
VPS50-213ENST00000477572 SHISA5Q8N114 240 aa8.59□□□□□ -1.03
VPS50-213ENST00000477572 SETDB2Q96T68 719 aa8.59□□□□□ -1.03
VPS50-213ENST00000477572 BCO2Q9BYV7 579 aa8.59□□□□□ -1.03
VPS50-213ENST00000477572 TRAK1Q9UPV9 953 aa8.59□□□□□ -1.03
VPS50-213ENST00000477572 HIF3AQ9Y2N7 669 aa8.59□□□□□ -1.03
VPS50-213ENST00000477572 FAM95CA0A1B0GW59 222 aa8.58□□□□□ -1.04
VPS50-213ENST00000477572 TREHO43280 583 aa8.58□□□□□ -1.04
VPS50-213ENST00000477572 MAPK8P45983 427 aa8.58□□□□□ -1.04
VPS50-213ENST00000477572 DYMQ7RTS9 669 aa8.58□□□□□ -1.04
VPS50-213ENST00000477572 DDX54Q8TDD1 881 aaKnown RBP8.58□□□□□ -1.04
VPS50-213ENST00000477572 AP4E1Q9UPM8 1137 aa8.58□□□□□ -1.04
VPS50-213ENST00000477572 RAB6AP20340 208 aa8.57□□□□□ -1.04
VPS50-213ENST00000477572 NXPE4Q6UWF7 544 aa8.57□□□□□ -1.04
VPS50-213ENST00000477572 ACTL7BQ9Y614 415 aa8.57□□□□□ -1.04
VPS50-213ENST00000477572 CD97P48960 835 aa8.56□□□□□ -1.04
VPS50-213ENST00000477572 PTPN12Q05209 780 aaKnown RBP8.56□□□□□ -1.04
VPS50-213ENST00000477572 ENOX2Q16206 610 aaKnown RBP8.56□□□□□ -1.04
VPS50-213ENST00000477572 GPN3Q9UHW5 284 aaPredicted RBP8.56□□□□□ -1.04
VPS50-213ENST00000477572 AKAP2Q9Y2D5 859 aa8.56□□□□□ -1.04
VPS50-213ENST00000477572 PRR19A6NJB7 356 aa8.55□□□□□ -1.04
VPS50-213ENST00000477572 EIF4EBP3O60516 100 aaPredicted RBP8.55□□□□□ -1.04
VPS50-213ENST00000477572 COBLO75128 1261 aa8.55□□□□□ -1.04
VPS50-213ENST00000477572 NFICP08651 508 aa8.55□□□□□ -1.04
VPS50-213ENST00000477572 LIG1P18858 919 aa8.55□□□□□ -1.04
VPS50-213ENST00000477572 KCNA1Q09470 495 aa8.55□□□□□ -1.04
VPS50-213ENST00000477572 WDR89Q96FK6 387 aaPredicted RBP8.55□□□□□ -1.04
VPS50-213ENST00000477572 LGR6Q9HBX8 967 aa8.55□□□□□ -1.04
VPS50-213ENST00000477572 FAM105AQ9NUU6 356 aa8.55□□□□□ -1.04
VPS50-213ENST00000477572 PPP4R2Q9NY27 417 aa8.55□□□□□ -1.04
VPS50-213ENST00000477572 WWC3Q9ULE0 1092 aa8.55□□□□□ -1.04
VPS50-213ENST00000477572 F13BP05160 661 aa8.54□□□□□ -1.04
VPS50-213ENST00000477572 RPS26P11Q5JNZ5 115 aaPredicted RBP8.54□□□□□ -1.04
VPS50-213ENST00000477572 PAOXQ6QHF9 649 aa8.54□□□□□ -1.04
VPS50-213ENST00000477572 CCDC86Q9H6F5 360 aaKnown RBP8.54□□□□□ -1.04
VPS50-213ENST00000477572 AOC2O75106 756 aa8.53□□□□□ -1.04
VPS50-213ENST00000477572 ADMP35318 185 aa8.53□□□□□ -1.04
VPS50-213ENST00000477572 ASPAP45381 313 aa8.53□□□□□ -1.04
VPS50-213ENST00000477572 AP3B2Q13367 1082 aa8.53□□□□□ -1.04
VPS50-213ENST00000477572 HP1BP3Q5SSJ5 553 aaPredicted RBP8.53□□□□□ -1.04
VPS50-213ENST00000477572 ZSCAN29Q8IWY8 852 aaPredicted RBP8.53□□□□□ -1.04
VPS50-213ENST00000477572 WDR18Q9BV38 432 aa8.53□□□□□ -1.04
VPS50-213ENST00000477572 ZFYVE1Q9HBF4 777 aa8.53□□□□□ -1.04
VPS50-213ENST00000477572 PPP1R9AQ9ULJ8 1098 aa8.53□□□□□ -1.04
VPS50-213ENST00000477572 HOXA10P31260 410 aaPredicted RBP8.52□□□□□ -1.05
VPS50-213ENST00000477572 STK35Q8TDR2 534 aa8.52□□□□□ -1.05
VPS50-213ENST00000477572 TBC1D32Q96NH3 1257 aa8.52□□□□□ -1.05
VPS50-213ENST00000477572 TRAIPQ9BWF2 469 aa8.52□□□□□ -1.05
VPS50-213ENST00000477572 ATG3Q9NT62 314 aa8.52□□□□□ -1.05
VPS50-213ENST00000477572 TMEM39AQ9NV64 488 aa8.52□□□□□ -1.05
VPS50-213ENST00000477572 GRIK1P39086 918 aa8.51□□□□□ -1.05
VPS50-213ENST00000477572 KCNB2Q92953 911 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms