RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 FAM46AQ96IP4 442 aaKnown RBP9.54□□□□□ -0.88
SYNE1-218ENST00000468937 SRCIN1Q9C0H9 1055 aa9.54□□□□□ -0.88
SYNE1-218ENST00000468937 AP3B2Q13367 1082 aa9.53□□□□□ -0.88
SYNE1-218ENST00000468937 POU4F3Q15319 338 aa9.53□□□□□ -0.88
SYNE1-218ENST00000468937 PRSS36Q5K4E3 855 aa9.53□□□□□ -0.88
SYNE1-218ENST00000468937 CORO1BQ9BR76 489 aa9.53□□□□□ -0.88
SYNE1-218ENST00000468937 TMPRSS13Q9BYE2 586 aa9.53□□□□□ -0.88
SYNE1-218ENST00000468937 SUGCTQ9HAC7 445 aa9.53□□□□□ -0.88
SYNE1-218ENST00000468937 RAXQ9Y2V3 346 aa9.53□□□□□ -0.88
SYNE1-218ENST00000468937 MAOBP27338 520 aa9.52□□□□□ -0.89
SYNE1-218ENST00000468937 COL19A1Q14993 1142 aa9.52□□□□□ -0.89
SYNE1-218ENST00000468937 NXPE4Q6UWF7 544 aa9.52□□□□□ -0.89
SYNE1-218ENST00000468937 C12orf50Q8NA57 414 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-218ENST00000468937 SMG8Q8ND04 991 aaKnown RBP9.52□□□□□ -0.89
SYNE1-218ENST00000468937 SPG7Q9UQ90 795 aa9.52□□□□□ -0.89
SYNE1-218ENST00000468937 HIF3AQ9Y2N7 669 aa9.52□□□□□ -0.89
SYNE1-218ENST00000468937 GAS2O43903 313 aaKnown RBP9.51□□□□□ -0.89
SYNE1-218ENST00000468937 HNRNPUQ00839 825 aaKnown RBP eCLIP9.51□□□□□ -0.89
SYNE1-218ENST00000468937 PPP2R3AQ06190 1150 aa9.51□□□□□ -0.89
SYNE1-218ENST00000468937 ARMC10Q8N2F6 343 aa9.51□□□□□ -0.89
SYNE1-218ENST00000468937 MYRFLQ96LU7 910 aa9.51□□□□□ -0.89
SYNE1-218ENST00000468937 FRMD6Q96NE9 622 aa9.51□□□□□ -0.89
SYNE1-218ENST00000468937 NRSN2Q9GZP1 204 aa9.51□□□□□ -0.89
SYNE1-218ENST00000468937 STOML1Q9UBI4 398 aa9.51□□□□□ -0.89
SYNE1-218ENST00000468937 GSC2O15499 205 aa9.5□□□□□ -0.89
SYNE1-218ENST00000468937 LDHBP07195 334 aaKnown RBP9.5□□□□□ -0.89
SYNE1-218ENST00000468937 P4HBP07237 508 aaKnown RBP9.5□□□□□ -0.89
SYNE1-218ENST00000468937 GSTT1P30711 240 aa9.5□□□□□ -0.89
SYNE1-218ENST00000468937 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-218ENST00000468937 AKAP2Q9Y2D5 859 aa9.5□□□□□ -0.89
SYNE1-218ENST00000468937 ITGB7P26010 798 aa9.49□□□□□ -0.89
SYNE1-218ENST00000468937 PREPP48147 710 aa9.49□□□□□ -0.89
SYNE1-218ENST00000468937 TMEM39AQ9NV64 488 aa9.49□□□□□ -0.89
SYNE1-218ENST00000468937 GPN3Q9UHW5 284 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-218ENST00000468937 ANKRD33BA6NCL7 494 aa9.48□□□□□ -0.89
SYNE1-218ENST00000468937 DLGAP3O95886 979 aa9.48□□□□□ -0.89
SYNE1-218ENST00000468937 FAM20CQ8IXL6 584 aa9.48□□□□□ -0.89
SYNE1-218ENST00000468937 TRIM56Q9BRZ2 755 aaKnown RBP9.48□□□□□ -0.89
SYNE1-218ENST00000468937 RAD18Q9NS91 495 aa9.48□□□□□ -0.89
SYNE1-218ENST00000468937 WWC3Q9ULE0 1092 aa9.48□□□□□ -0.89
SYNE1-218ENST00000468937 TIAF1O95411 115 aa9.47□□□□□ -0.89
SYNE1-218ENST00000468937 BMP3P12645 472 aa9.47□□□□□ -0.89
SYNE1-218ENST00000468937 ZNF157P51786 506 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-218ENST00000468937 FAAP100Q0VG06 881 aa9.47□□□□□ -0.89
SYNE1-218ENST00000468937 CLEC10AQ8IUN9 316 aa9.47□□□□□ -0.89
SYNE1-218ENST00000468937 KCNF1Q9H3M0 494 aa9.47□□□□□ -0.89
SYNE1-218ENST00000468937 FSTP19883 344 aa9.46□□□□□ -0.9
SYNE1-218ENST00000468937 SOX4Q06945 474 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-218ENST00000468937 EAPPQ56P03 285 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-218ENST00000468937 ZMYM1Q5SVZ6 1142 aa9.46□□□□□ -0.9
SYNE1-218ENST00000468937 SETDB2Q96T68 719 aa9.46□□□□□ -0.9
SYNE1-218ENST00000468937 GZF1Q9H116 711 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-218ENST00000468937 PPM1HQ9ULR3 514 aa9.46□□□□□ -0.9
SYNE1-218ENST00000468937 PRPF40AO75400 957 aaKnown RBP9.45□□□□□ -0.9
SYNE1-218ENST00000468937 USP11P51784 963 aa9.45□□□□□ -0.9
SYNE1-218ENST00000468937 PDE3AQ14432 1141 aa9.45□□□□□ -0.9
SYNE1-218ENST00000468937 FAM83CQ9BQN1 747 aa9.45□□□□□ -0.9
SYNE1-218ENST00000468937 YIPF2Q9BWQ6 316 aa9.45□□□□□ -0.9
SYNE1-218ENST00000468937 OSBPL7Q9BZF2 842 aa9.45□□□□□ -0.9
SYNE1-218ENST00000468937 CEP44Q9C0F1 390 aa9.45□□□□□ -0.9
SYNE1-218ENST00000468937 C12orf49Q9H741 205 aa9.45□□□□□ -0.9
SYNE1-218ENST00000468937 FAM8A1Q9UBU6 413 aa9.45□□□□□ -0.9
SYNE1-218ENST00000468937 ERCC3P19447 782 aa9.44□□□□□ -0.9
SYNE1-218ENST00000468937 BEND4Q6ZU67 534 aa9.44□□□□□ -0.9
SYNE1-218ENST00000468937 C3orf58Q8NDZ4 430 aa9.44□□□□□ -0.9
SYNE1-218ENST00000468937 SYNGAP1Q96PV0 1343 aa9.44□□□□□ -0.9
SYNE1-218ENST00000468937 IGLV1-40P01703 118 aa9.43□□□□□ -0.9
SYNE1-218ENST00000468937 CTSBP07858 339 aa9.43□□□□□ -0.9
SYNE1-218ENST00000468937 ADH5P11766 374 aa9.43□□□□□ -0.9
SYNE1-218ENST00000468937 DRD2P14416 443 aa9.43□□□□□ -0.9
SYNE1-218ENST00000468937 RXRBP28702 533 aa9.43□□□□□ -0.9
SYNE1-218ENST00000468937 GNA15P30679 374 aa9.43□□□□□ -0.9
SYNE1-218ENST00000468937 CCDC27Q2M243 656 aa9.43□□□□□ -0.9
SYNE1-218ENST00000468937 EMILIN2Q9BXX0 1053 aa9.43□□□□□ -0.9
SYNE1-218ENST00000468937 C7orf69Q9H7B7 122 aa9.43□□□□□ -0.9
SYNE1-218ENST00000468937 SAMM50Q9Y512 469 aa9.43□□□□□ -0.9
SYNE1-218ENST00000468937 GSTP1P09211 210 aaKnown RBP9.42□□□□□ -0.9
SYNE1-218ENST00000468937 MAP4P27816 1152 aaKnown RBP9.42□□□□□ -0.9
SYNE1-218ENST00000468937 AKAP4Q5JQC9 854 aa9.42□□□□□ -0.9
SYNE1-218ENST00000468937 RNF43Q68DV7 783 aa9.42□□□□□ -0.9
SYNE1-218ENST00000468937 TRIM42Q8IWZ5 723 aa9.42□□□□□ -0.9
SYNE1-218ENST00000468937 ANKRD24Q8TF21 1146 aa9.42□□□□□ -0.9
SYNE1-218ENST00000468937 KRT82Q9NSB4 513 aa9.42□□□□□ -0.9
SYNE1-218ENST00000468937 HMX2A2RU54 273 aa9.41□□□□□ -0.9
SYNE1-218ENST00000468937 AOC2O75106 756 aa9.41□□□□□ -0.9
SYNE1-218ENST00000468937 ECEL1O95672 775 aa9.41□□□□□ -0.9
SYNE1-218ENST00000468937 SLFN14P0C7P3 912 aa9.41□□□□□ -0.9
SYNE1-218ENST00000468937 NME2P22392 152 aa9.41□□□□□ -0.9
SYNE1-218ENST00000468937 EIF4BP23588 611 aaKnown RBP9.41□□□□□ -0.9
SYNE1-218ENST00000468937 NFIAQ12857 509 aa9.41□□□□□ -0.9
SYNE1-218ENST00000468937 SGO2Q562F6 1265 aa9.41□□□□□ -0.9
SYNE1-218ENST00000468937 DNAJC14Q6Y2X3 702 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-218ENST00000468937 SULF2Q8IWU5 870 aa9.41□□□□□ -0.9
SYNE1-218ENST00000468937 C2CD4AQ8NCU7 369 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-218ENST00000468937 ARNTP27540 789 aa9.4□□□□□ -0.9
SYNE1-218ENST00000468937 DYMQ7RTS9 669 aa9.4□□□□□ -0.9
SYNE1-218ENST00000468937 NECAB3Q96P71 396 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-218ENST00000468937 DBNDD2Q9BQY9 259 aa9.4□□□□□ -0.9
SYNE1-218ENST00000468937 RNF112Q9ULX5 631 aa9.4□□□□□ -0.9
SYNE1-218ENST00000468937 AP4E1Q9UPM8 1137 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms