RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 AEBP2Q6ZN18 517 aaPredicted RBP30.67■■■□□ 2.5
SYNE1-218ENST00000468937 CHIC1Q5VXU3 224 aa29.87■■■□□ 2.37
SYNE1-218ENST00000468937 SENP3Q9H4L4 574 aaPredicted RBP26.19■■□□□ 1.78
SYNE1-218ENST00000468937 PHF23Q9BUL5 403 aaPredicted RBP26.18■■□□□ 1.78
SYNE1-218ENST00000468937 PLPPR3Q6T4P5 718 aa24.24■■□□□ 1.47
SYNE1-218ENST00000468937 FOXD1Q16676 465 aa24.23■■□□□ 1.47
SYNE1-218ENST00000468937 PPP6R1Q9UPN7 881 aa23.15■■□□□ 1.3
SYNE1-218ENST00000468937 ADRA2BP18089 450 aa23.14■■□□□ 1.29
SYNE1-218ENST00000468937 PIAS4Q8N2W9 510 aaPredicted RBP22.87■■□□□ 1.25
SYNE1-218ENST00000468937 MSH5O43196 834 aa22.53■■□□□ 1.2
SYNE1-218ENST00000468937 SCAF1Q9H7N4 1312 aaKnown RBP21.34■■□□□ 1.01
SYNE1-218ENST00000468937 PPP4R3CPQ6ZMV5 832 aa21.29■■□□□ 1
SYNE1-218ENST00000468937 MAPK8IP2Q13387 824 aaPredicted RBP21.03■□□□□ 0.96
SYNE1-218ENST00000468937 DMRT2Q9Y5R5 561 aa20.84■□□□□ 0.93
SYNE1-218ENST00000468937 NCBP3Q53F19 620 aaKnown RBP20.78■□□□□ 0.92
SYNE1-218ENST00000468937 CNKSR2Q8WXI2 1034 aa20.78■□□□□ 0.92
SYNE1-218ENST00000468937 POTEDQ86YR6 584 aa20.72■□□□□ 0.91
SYNE1-218ENST00000468937 KCNA4P22459 653 aa20.56■□□□□ 0.88
SYNE1-218ENST00000468937 RNF216Q9NWF9 866 aaPredicted RBP20.41■□□□□ 0.86
SYNE1-218ENST00000468937 NPM3O75607 178 aaKnown RBP20.36■□□□□ 0.85
SYNE1-218ENST00000468937 HOXD11P31277 338 aaPredicted RBP20.35■□□□□ 0.85
SYNE1-218ENST00000468937 DCAF8L1A6NGE4 600 aa19.97■□□□□ 0.79
SYNE1-218ENST00000468937 DNAJC5BQ9UF47 199 aa19.86■□□□□ 0.77
SYNE1-218ENST00000468937 SLC4A1APQ9BWU0 796 aaKnown RBP19.61■□□□□ 0.73
SYNE1-218ENST00000468937 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.43■□□□□ 0.7
SYNE1-218ENST00000468937 SLC4A2P04920 1241 aa19.24■□□□□ 0.67
SYNE1-218ENST00000468937 RNF39Q9H2S5 420 aa19.22■□□□□ 0.67
SYNE1-218ENST00000468937 C1QBPQ07021 282 aaKnown RBP19.05■□□□□ 0.64
SYNE1-218ENST00000468937 FOXD4L1Q9NU39 408 aa19.04■□□□□ 0.64
SYNE1-218ENST00000468937 U3KPZ7 1027 aaPredicted RBP19.02■□□□□ 0.64
SYNE1-218ENST00000468937 CACNB1Q02641 598 aaPredicted RBP18.89■□□□□ 0.61
SYNE1-218ENST00000468937 MYCNP04198 464 aaPredicted RBP18.88■□□□□ 0.61
SYNE1-218ENST00000468937 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.87■□□□□ 0.61
SYNE1-218ENST00000468937 HNRNPUL2Q1KMD3 747 aaKnown RBP18.87■□□□□ 0.61
SYNE1-218ENST00000468937 ZBTB22O15209 634 aa18.86■□□□□ 0.61
SYNE1-218ENST00000468937 EHMT2Q96KQ7 1210 aa18.8■□□□□ 0.6
SYNE1-218ENST00000468937 SAMD1Q6SPF0 538 aaPredicted RBP18.76■□□□□ 0.59
SYNE1-218ENST00000468937 APLP2Q06481 763 aa18.75■□□□□ 0.59
SYNE1-218ENST00000468937 CSRNP3Q8WYN3 585 aa18.66■□□□□ 0.58
SYNE1-218ENST00000468937 CAPN15O75808 1086 aa18.53■□□□□ 0.56
SYNE1-218ENST00000468937 SPINK5Q9NQ38 1064 aaPredicted RBP18.52■□□□□ 0.56
SYNE1-218ENST00000468937 ATXN8OSP0DMR3 200 aa18.44■□□□□ 0.54
SYNE1-218ENST00000468937 ZNF219Q9P2Y4 722 aaPredicted RBP18.44■□□□□ 0.54
SYNE1-218ENST00000468937 TRHP20396 242 aaPredicted RBP18.39■□□□□ 0.53
SYNE1-218ENST00000468937 ATF5Q9Y2D1 282 aaPredicted RBP18.26■□□□□ 0.51
SYNE1-218ENST00000468937 DSG3P32926 999 aa18.22■□□□□ 0.51
SYNE1-218ENST00000468937 ABCB7O75027 752 aa18.11■□□□□ 0.49
SYNE1-218ENST00000468937 POLA2Q14181 598 aa18.06■□□□□ 0.48
SYNE1-218ENST00000468937 ZBTB12Q9Y330 459 aaPredicted RBP17.84■□□□□ 0.45
SYNE1-218ENST00000468937 FBLN2P98095 1184 aa17.67■□□□□ 0.42
SYNE1-218ENST00000468937 MKRN4PQ13434 485 aaPredicted RBP17.48■□□□□ 0.39
SYNE1-218ENST00000468937 RBM42Q9BTD8 480 aaKnown RBP17.48■□□□□ 0.39
SYNE1-218ENST00000468937 OSCARQ8IYS5 282 aa17.41■□□□□ 0.38
SYNE1-218ENST00000468937 SPDYE2BA6NHP3 402 aa17.29■□□□□ 0.36
SYNE1-218ENST00000468937 SPDYE6P0CI01 402 aa17.29■□□□□ 0.36
SYNE1-218ENST00000468937 SPDYE2Q495Y8 402 aa17.29■□□□□ 0.36
SYNE1-218ENST00000468937 AKT1S1Q96B36 256 aa17.19■□□□□ 0.34
SYNE1-218ENST00000468937 ZNF692Q9BU19 519 aaPredicted RBP17.19■□□□□ 0.34
SYNE1-218ENST00000468937 SPDYE4A6NLX3 237 aa17.09■□□□□ 0.33
SYNE1-218ENST00000468937 SSUH2Q9Y2M2 353 aa17.09■□□□□ 0.33
SYNE1-218ENST00000468937 REM2Q8IYK8 340 aaPredicted RBP16.97■□□□□ 0.31
SYNE1-218ENST00000468937 PABPN1Q86U42 306 aaKnown RBP eCLIP16.93■□□□□ 0.3
SYNE1-218ENST00000468937 FKBP8Q14318 412 aa16.92■□□□□ 0.3
SYNE1-218ENST00000468937 SPDYE1Q8NFV5 336 aaPredicted RBP16.84■□□□□ 0.29
SYNE1-218ENST00000468937 PITPNM1O00562 1244 aa16.76■□□□□ 0.27
SYNE1-218ENST00000468937 CHRDL2Q6WN34 429 aa16.75■□□□□ 0.27
SYNE1-218ENST00000468937 PROM2Q8N271 834 aa16.74■□□□□ 0.27
SYNE1-218ENST00000468937 CLEC11AQ9Y240 323 aa16.74■□□□□ 0.27
SYNE1-218ENST00000468937 STAG3Q9UJ98 1225 aa16.71■□□□□ 0.27
SYNE1-218ENST00000468937 PRR29P0C7W0 189 aa16.59■□□□□ 0.25
SYNE1-218ENST00000468937 FXR2P51116 673 aaKnown RBP eCLIP16.5■□□□□ 0.23
SYNE1-218ENST00000468937 FBXO3Q9UK99 471 aa16.48■□□□□ 0.23
SYNE1-218ENST00000468937 PIP4P2Q8N4L2 257 aa16.46■□□□□ 0.23
SYNE1-218ENST00000468937 POTEHQ6S545 545 aa16.41■□□□□ 0.22
SYNE1-218ENST00000468937 PRKAR2AP13861 404 aaKnown RBP16.37■□□□□ 0.21
SYNE1-218ENST00000468937 PLEKHG5O94827 1062 aa16.28■□□□□ 0.2
SYNE1-218ENST00000468937 CHADLQ6NUI6 762 aa16.28■□□□□ 0.2
SYNE1-218ENST00000468937 MIER1Q8N108 512 aa16.26■□□□□ 0.19
SYNE1-218ENST00000468937 CREBZFQ9NS37 354 aa16.26■□□□□ 0.19
SYNE1-218ENST00000468937 PLCD3Q8N3E9 789 aa16.22■□□□□ 0.19
SYNE1-218ENST00000468937 FARP1Q9Y4F1 1045 aaPredicted RBP16.17■□□□□ 0.18
SYNE1-218ENST00000468937 VASPP50552 380 aaPredicted RBP16.16■□□□□ 0.18
SYNE1-218ENST00000468937 ZBTB47Q9UFB7 747 aaPredicted RBP16.13■□□□□ 0.17
SYNE1-218ENST00000468937 NPM1P06748 294 aaKnown RBP eCLIP16.1■□□□□ 0.17
SYNE1-218ENST00000468937 MNX1P50219 401 aaPredicted RBP16.05■□□□□ 0.16
SYNE1-218ENST00000468937 HAX1O00165 279 aa16.03■□□□□ 0.16
SYNE1-218ENST00000468937 KLHL34Q8N239 644 aa15.98■□□□□ 0.15
SYNE1-218ENST00000468937 C19orf67A6NJJ6 358 aa15.95■□□□□ 0.14
SYNE1-218ENST00000468937 CD44P16070 742 aaKnown RBP15.9■□□□□ 0.14
SYNE1-218ENST00000468937 PAK3O75914 559 aaPredicted RBP15.89■□□□□ 0.13
SYNE1-218ENST00000468937 IFNLR1Q8IU57 520 aaPredicted RBP15.89■□□□□ 0.13
SYNE1-218ENST00000468937 SPOCK2Q92563 424 aa15.8■□□□□ 0.12
SYNE1-218ENST00000468937 NUBP1P53384 320 aa15.79■□□□□ 0.12
SYNE1-218ENST00000468937 ZRANB1Q9UGI0 708 aa15.78■□□□□ 0.12
SYNE1-218ENST00000468937 EVX2Q03828 476 aa15.77■□□□□ 0.12
SYNE1-218ENST00000468937 RASEFQ8IZ41 740 aa15.76■□□□□ 0.11
SYNE1-218ENST00000468937 FAM212AQ96EL1 285 aa15.75■□□□□ 0.11
SYNE1-218ENST00000468937 TSPYL2Q9H2G4 693 aaPredicted RBP15.75■□□□□ 0.11
SYNE1-218ENST00000468937 SP7Q8TDD2 431 aaPredicted RBP15.71■□□□□ 0.11
SYNE1-218ENST00000468937 DCAF8Q5TAQ9 597 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms