RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 CNNM1Q9NRU3 951 aa15.58■□□□□ 0.08
HDAC4-207ENST00000461113 BSDC1Q9NW68 430 aaPredicted RBP15.58■□□□□ 0.08
HDAC4-207ENST00000461113 RLBP1P12271 317 aa15.57■□□□□ 0.08
HDAC4-207ENST00000461113 MAP3K11Q16584 847 aa15.57■□□□□ 0.08
HDAC4-207ENST00000461113 RABL6Q3YEC7 729 aaPredicted RBP15.57■□□□□ 0.08
HDAC4-207ENST00000461113 LDHAL6AQ6ZMR3 332 aa15.57■□□□□ 0.08
HDAC4-207ENST00000461113 ANKRD2Q9GZV1 360 aa15.57■□□□□ 0.08
HDAC4-207ENST00000461113 COG6Q9Y2V7 657 aa15.57■□□□□ 0.08
HDAC4-207ENST00000461113 RANBP2P49792 3224 aaKnown RBP15.57■□□□□ 0.08
HDAC4-207ENST00000461113 ATP2B4P23634 1241 aa15.56■□□□□ 0.08
HDAC4-207ENST00000461113 GJA5P36382 358 aa15.56■□□□□ 0.08
HDAC4-207ENST00000461113 MNX1P50219 401 aaPredicted RBP15.56■□□□□ 0.08
HDAC4-207ENST00000461113 ARHGEF6Q15052 776 aa15.56■□□□□ 0.08
HDAC4-207ENST00000461113 SH3TC2Q8TF17 1288 aa15.56■□□□□ 0.08
HDAC4-207ENST00000461113 DEFB129Q9H1M3 183 aa15.56■□□□□ 0.08
HDAC4-207ENST00000461113 XDHP47989 1333 aa15.56■□□□□ 0.08
HDAC4-207ENST00000461113 CUL9Q8IWT3 2517 aa15.55■□□□□ 0.08
HDAC4-207ENST00000461113 MYO3BQ8WXR4 1341 aa15.55■□□□□ 0.08
HDAC4-207ENST00000461113 ZBTB7BO15156 539 aaPredicted RBP15.55■□□□□ 0.08
HDAC4-207ENST00000461113 PPP1R12BO60237 982 aaPredicted RBP15.55■□□□□ 0.08
HDAC4-207ENST00000461113 KCNJ4P48050 445 aa15.55■□□□□ 0.08
HDAC4-207ENST00000461113 ANKRD44Q8N8A2 993 aa15.55■□□□□ 0.08
HDAC4-207ENST00000461113 KAZALD1Q96I82 304 aa15.55■□□□□ 0.08
HDAC4-207ENST00000461113 PRO3102Q9H379 93 aa15.55■□□□□ 0.08
HDAC4-207ENST00000461113 STRIP1Q5VSL9 837 aa15.54■□□□□ 0.08
HDAC4-207ENST00000461113 TESPA1A2RU30 521 aaPredicted RBP15.53■□□□□ 0.08
HDAC4-207ENST00000461113 SOX1O00570 391 aaPredicted RBP15.53■□□□□ 0.08
HDAC4-207ENST00000461113 SRGAP3O43295 1099 aa15.53■□□□□ 0.08
HDAC4-207ENST00000461113 KIAA0825Q8IV33 1275 aa15.53■□□□□ 0.08
HDAC4-207ENST00000461113 ZBED3Q96IU2 234 aaPredicted RBP15.53■□□□□ 0.08
HDAC4-207ENST00000461113 MINPP1Q9UNW1 487 aa15.53■□□□□ 0.08
HDAC4-207ENST00000461113 COL6A3P12111 3177 aa15.53■□□□□ 0.08
HDAC4-207ENST00000461113 UNCXA6NJT0 531 aa15.52■□□□□ 0.08
HDAC4-207ENST00000461113 MMP14P50281 582 aa15.52■□□□□ 0.08
HDAC4-207ENST00000461113 SHISA4Q96DD7 197 aa15.52■□□□□ 0.08
HDAC4-207ENST00000461113 LRCH3Q96II8 777 aa15.52■□□□□ 0.08
HDAC4-207ENST00000461113 ZNF594Q96JF6 807 aaPredicted RBP15.52■□□□□ 0.08
HDAC4-207ENST00000461113 FBXO3Q9UK99 471 aa15.52■□□□□ 0.08
HDAC4-207ENST00000461113 LEMD3Q9Y2U8 911 aa15.52■□□□□ 0.08
HDAC4-207ENST00000461113 SSC5DA1L4H1 1573 aa15.52■□□□□ 0.07
HDAC4-207ENST00000461113 MED23Q9ULK4 1368 aa15.51■□□□□ 0.07
HDAC4-207ENST00000461113 MROH5Q6ZUA9 1318 aa15.51■□□□□ 0.07
HDAC4-207ENST00000461113 HMMRO75330 724 aa15.51■□□□□ 0.07
HDAC4-207ENST00000461113 CENPBP07199 599 aaPredicted RBP15.51■□□□□ 0.07
HDAC4-207ENST00000461113 IREB2P48200 963 aaKnown RBP15.51■□□□□ 0.07
HDAC4-207ENST00000461113 SUPT16HQ9Y5B9 1047 aaKnown RBP15.51■□□□□ 0.07
HDAC4-207ENST00000461113 USP2O75604 605 aaPredicted RBP15.5■□□□□ 0.07
HDAC4-207ENST00000461113 ATP8B2P98198 1209 aa15.5■□□□□ 0.07
HDAC4-207ENST00000461113 CHRNDQ07001 517 aa15.5■□□□□ 0.07
HDAC4-207ENST00000461113 MTX1Q13505 466 aa15.5■□□□□ 0.07
HDAC4-207ENST00000461113 TAF1CQ15572 869 aaPredicted RBP15.5■□□□□ 0.07
HDAC4-207ENST00000461113 SUPT20HL1Q3ZLR7 823 aa15.5■□□□□ 0.07
HDAC4-207ENST00000461113 METTL24Q5JXM2 366 aa15.5■□□□□ 0.07
HDAC4-207ENST00000461113 C20orf194Q5TEA3 1177 aa15.5■□□□□ 0.07
HDAC4-207ENST00000461113 TTLL5Q6EMB2 1281 aa15.5■□□□□ 0.07
HDAC4-207ENST00000461113 ARHGAP39Q9C0H5 1083 aa15.5■□□□□ 0.07
HDAC4-207ENST00000461113 COA1Q9GZY4 146 aa15.5■□□□□ 0.07
HDAC4-207ENST00000461113 C1orf115Q9H7X2 142 aa15.5■□□□□ 0.07
HDAC4-207ENST00000461113 ELP3Q9H9T3 547 aa15.5■□□□□ 0.07
HDAC4-207ENST00000461113 ZFYVE28Q9HCC9 887 aa15.5■□□□□ 0.07
HDAC4-207ENST00000461113 COL1A1P02452 1464 aaPredicted RBP15.5■□□□□ 0.07
HDAC4-207ENST00000461113 EYA2O00167 538 aa15.49■□□□□ 0.07
HDAC4-207ENST00000461113 G3BP1Q13283 466 aaKnown RBP eCLIP15.49■□□□□ 0.07
HDAC4-207ENST00000461113 OS9Q13438 667 aaPredicted RBP15.49■□□□□ 0.07
HDAC4-207ENST00000461113 MTFR1Q15390 333 aa15.49■□□□□ 0.07
HDAC4-207ENST00000461113 DLGAP5Q15398 846 aa15.49■□□□□ 0.07
HDAC4-207ENST00000461113 NBPF12Q5TAG4 269 aaPredicted RBP15.49■□□□□ 0.07
HDAC4-207ENST00000461113 RPAP2Q8IXW5 612 aaPredicted RBP15.49■□□□□ 0.07
HDAC4-207ENST00000461113 ANKRD13AQ8IZ07 590 aa15.49■□□□□ 0.07
HDAC4-207ENST00000461113 BRI3BPQ8WY22 251 aa15.49■□□□□ 0.07
HDAC4-207ENST00000461113 OPTNQ96CV9 577 aa15.49■□□□□ 0.07
HDAC4-207ENST00000461113 MS4A4AQ96JQ5 239 aa15.49■□□□□ 0.07
HDAC4-207ENST00000461113 HTATIP2Q9BUP3 242 aa15.49■□□□□ 0.07
HDAC4-207ENST00000461113 ZBTB40Q9NUA8 1239 aa15.49■□□□□ 0.07
HDAC4-207ENST00000461113 PPP2R3BQ9Y5P8 575 aa15.49■□□□□ 0.07
HDAC4-207ENST00000461113 NR2E3Q9Y5X4 410 aa15.49■□□□□ 0.07
HDAC4-207ENST00000461113 CIAO1O76071 339 aa15.48■□□□□ 0.07
HDAC4-207ENST00000461113 IL15P40933 162 aaPredicted RBP15.48■□□□□ 0.07
HDAC4-207ENST00000461113 TXNRD3Q86VQ6 643 aa15.48■□□□□ 0.07
HDAC4-207ENST00000461113 SIL1Q9H173 461 aa15.48■□□□□ 0.07
HDAC4-207ENST00000461113 COPRSQ9NQ92 184 aa15.48■□□□□ 0.07
HDAC4-207ENST00000461113 CEP126Q9P2H0 1117 aa15.48■□□□□ 0.07
HDAC4-207ENST00000461113 PCDHAC2Q9Y5I4 1007 aa15.48■□□□□ 0.07
HDAC4-207ENST00000461113 PSME4Q14997 1843 aa15.47■□□□□ 0.07
HDAC4-207ENST00000461113 ZNF804BA4D1E1 1349 aa15.47■□□□□ 0.07
HDAC4-207ENST00000461113 A0A1W2PPC1 479 aa15.47■□□□□ 0.07
HDAC4-207ENST00000461113 CLRN2A0PK11 232 aa15.47■□□□□ 0.07
HDAC4-207ENST00000461113 RFX5P48382 616 aaPredicted RBP15.47■□□□□ 0.07
HDAC4-207ENST00000461113 GTF2IP78347 998 aa15.47■□□□□ 0.07
HDAC4-207ENST00000461113 AAMPQ13685 434 aa15.47■□□□□ 0.07
HDAC4-207ENST00000461113 HELBQ8NG08 1087 aaPredicted RBP15.47■□□□□ 0.07
HDAC4-207ENST00000461113 KLHDC4Q8TBB5 520 aa15.47■□□□□ 0.07
HDAC4-207ENST00000461113 RIPOR2Q9Y4F9 1068 aa15.47■□□□□ 0.07
HDAC4-207ENST00000461113 CCL15-CCL14A0A0B4J2E2 113 aa15.46■□□□□ 0.07
HDAC4-207ENST00000461113 UBE4AQ14139 1066 aa15.46■□□□□ 0.07
HDAC4-207ENST00000461113 KIF22Q14807 665 aa15.46■□□□□ 0.07
HDAC4-207ENST00000461113 CCL15Q16663 113 aa15.46■□□□□ 0.07
HDAC4-207ENST00000461113 LRRC24Q50LG9 513 aa15.46■□□□□ 0.07
HDAC4-207ENST00000461113 HSP90AB4PQ58FF6 505 aa15.46■□□□□ 0.07
HDAC4-207ENST00000461113 UBE2Q1Q7Z7E8 422 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms