RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	ARHGEF1	Q92888	912 aa	Known RBP	10.37	□□□□□ -0.75
SYNE1-215	ENST00000460912	ATL3	Q6DD88	541 aa		10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	SARM1	Q6SZW1	724 aa		10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	TTLL11	Q8NHH1	800 aa		10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	SBF1	O95248	1867 aa		10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	ADCY5	O95622	1261 aa		10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	CDC25B	P30305	580 aa		10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	SUSD4	Q5VX71	490 aa		10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	SCAND2P	Q9GZW5	306 aa	Predicted RBP	10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	CCNL1	Q9UK58	526 aa	Predicted RBP	10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	KAT6B	Q8WYB5	2073 aa		10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	FIBP	O43427	364 aa		10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	GYS1	P13807	737 aa		10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	CCDC9	Q9Y3X0	531 aa	Known RBP	10.36	□□□□□ -0.75
SYNE1-215	ENST00000460912	NCL	P19338	710 aa	Known RBP	10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	MCAM	P43121	646 aa		10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	KCNQ4	P56696	695 aa		10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	BRF1	Q92994	677 aa		10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	PAPPA2	Q9BXP8	1791 aa		10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	KRT85	P78386	507 aa		10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	CSPP1	Q1MSJ5	1256 aa		10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	CRY2	Q49AN0	593 aa		10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	TRIM44	Q96DX7	344 aa	Predicted RBP	10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	XAGE2	Q96GT9	111 aa		10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	TYRO3	Q06418	890 aa		10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	TBC1D9B	Q66K14	1250 aa		10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	DZIP3	Q86Y13	1208 aa	Known RBP	10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	RNF214	Q8ND24	703 aa		10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	PUS7L	Q9H0K6	701 aa	Known RBP	10.35	□□□□□ -0.75
SYNE1-215	ENST00000460912	BAZ2A	Q9UIF9	1905 aa	Known RBP	10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	GOLIM4	O00461	696 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	C3orf67	Q6ZVT6	689 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	FMR1NB	Q8N0W7	255 aa	Predicted RBP	10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	SGIP1	Q9BQI5	828 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	HSD3B7	Q9H2F3	369 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	ADAMTSL1	Q8N6G6	1762 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	ADD2	P35612	726 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	ALX1	Q15699	326 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	NTRK3	Q16288	839 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	DHX40	Q8IX18	779 aa	Known RBP	10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	SYNE4	Q8N205	404 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	FAM200A	Q8TCP9	573 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	TTLL5	Q6EMB2	1281 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	CCDC125	Q86Z20	511 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	CBX8	Q9HC52	389 aa		10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	DDX19A	Q9NUU7	478 aa	Known RBP	10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	MORC2	Q9Y6X9	1032 aa	Predicted RBP	10.34	□□□□□ -0.75
SYNE1-215	ENST00000460912	POLRMT	O00411	1230 aa	Known RBP	10.33	□□□□□ -0.76
SYNE1-215	ENST00000460912	SF3B3	Q15393	1217 aa	Known RBP	10.33	□□□□□ -0.76
SYNE1-215	ENST00000460912	RTEL1	Q9NZ71	1219 aa		10.33	□□□□□ -0.76
SYNE1-215	ENST00000460912	PTPDC1	A2A3K4	754 aa		10.33	□□□□□ -0.76
SYNE1-215	ENST00000460912	SMIM5	Q71RC9	77 aa		10.33	□□□□□ -0.76
SYNE1-215	ENST00000460912	SIPA1L1	O43166	1804 aa		10.33	□□□□□ -0.76
SYNE1-215	ENST00000460912	RRP9	O43818	475 aa	Known RBP	10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	FGA	P02671	866 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	ZFY	P08048	801 aa	Predicted RBP	10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	DDR1	Q08345	913 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	APOBR	Q0VD83	1088 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	AXDND1	Q5T1B0	1012 aa	Predicted RBP	10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	ZNF710	Q8N1W2	664 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	BPIFA3	Q9BQP9	254 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	ZBTB3	Q9H5J0	574 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	GPHN	Q9NQX3	736 aa	Predicted RBP	10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	DACT1	Q9NYF0	836 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	MYH1	P12882	1939 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	CTSW	P56202	376 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	HSP90AB3P	Q58FF7	597 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	FOXD4L3	Q6VB84	417 aa	Predicted RBP	10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	PLCD3	Q8N3E9	789 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	APPBP2	Q92624	585 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	FTO	Q9C0B1	505 aa	Known RBP eCLIP	10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	DENND2A	Q9ULE3	1009 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	SCN9A	Q15858	1988 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912		A0A1W2PQ27	194 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912		A0A1W2PQ64	194 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912		A0A1W2PQD8	194 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	PARP10	Q53GL7	1025 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	COL23A1	Q86Y22	540 aa	Predicted RBP	10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	DNAJC2	Q99543	621 aa	Known RBP	10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	MAP3K14	Q99558	947 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	PYCARD	Q9ULZ3	195 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	COL4A5	P29400	1685 aa		10.32	□□□□□ -0.76
SYNE1-215	ENST00000460912	CTIF	O43310	598 aa	Known RBP	10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	TBC1D10C	Q8IV04	446 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	USP28	Q96RU2	1077 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	GREM2	Q9H772	168 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	PIH1D3	Q9NQM4	214 aa	Known RBP	10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	HPSE	Q9Y251	543 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	ZNF804B	A4D1E1	1349 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	KIF28P	B7ZC32	967 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	ZAP70	P43403	619 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	MYRIP	Q8NFW9	859 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	IGDCC4	Q8TDY8	1250 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	POLR3E	Q9NVU0	708 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	HMGN5	P82970	282 aa	Known RBP	10.31	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms