RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ZSCAN29Q8IWY8 852 aaPredicted RBP6.07□□□□□ -1.44
VPS41-207ENST00000439468 FAM46AQ96IP4 442 aaKnown RBP6.07□□□□□ -1.44
VPS41-207ENST00000439468 CORO1BQ9BR76 489 aa6.07□□□□□ -1.44
VPS41-207ENST00000439468 ZNF576Q9H609 170 aa6.07□□□□□ -1.44
VPS41-207ENST00000439468 CYP11A1P05108 521 aa6.06□□□□□ -1.44
VPS41-207ENST00000439468 MAOBP27338 520 aa6.06□□□□□ -1.44
VPS41-207ENST00000439468 ZNF157P51786 506 aaPredicted RBP6.06□□□□□ -1.44
VPS41-207ENST00000439468 FCGRTP55899 365 aa6.06□□□□□ -1.44
VPS41-207ENST00000439468 TAGLNQ01995 201 aaKnown RBP6.06□□□□□ -1.44
VPS41-207ENST00000439468 GRM2Q14416 872 aa6.06□□□□□ -1.44
VPS41-207ENST00000439468 POU4F3Q15319 338 aa6.06□□□□□ -1.44
VPS41-207ENST00000439468 PI16Q6UXB8 463 aa6.06□□□□□ -1.44
VPS41-207ENST00000439468 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.06□□□□□ -1.44
VPS41-207ENST00000439468 NPM2Q86SE8 214 aaKnown RBP6.06□□□□□ -1.44
VPS41-207ENST00000439468 C7orf69Q9H7B7 122 aa6.06□□□□□ -1.44
VPS41-207ENST00000439468 ABCB6Q9NP58 842 aa6.06□□□□□ -1.44
VPS41-207ENST00000439468 RAD18Q9NS91 495 aa6.06□□□□□ -1.44
VPS41-207ENST00000439468 PPP4R2Q9NY27 417 aa6.06□□□□□ -1.44
VPS41-207ENST00000439468 TMEM238LA0A1B0GVL6 79 aa6.05□□□□□ -1.44
VPS41-207ENST00000439468 HMX2A2RU54 273 aa6.05□□□□□ -1.44
VPS41-207ENST00000439468 MEGF11A6BM72 1044 aa6.05□□□□□ -1.44
VPS41-207ENST00000439468 GSC2O15499 205 aa6.05□□□□□ -1.44
VPS41-207ENST00000439468 IGLV1-40P01703 118 aa6.05□□□□□ -1.44
VPS41-207ENST00000439468 ITPKAP23677 461 aa6.05□□□□□ -1.44
VPS41-207ENST00000439468 USP11P51784 963 aa6.05□□□□□ -1.44
VPS41-207ENST00000439468 PDE3AQ14432 1141 aa6.05□□□□□ -1.44
VPS41-207ENST00000439468 EXOSC6Q5RKV6 272 aaKnown RBP6.05□□□□□ -1.44
VPS41-207ENST00000439468 HP1BP3Q5SSJ5 553 aaPredicted RBP6.05□□□□□ -1.44
VPS41-207ENST00000439468 BEND4Q6ZU67 534 aa6.05□□□□□ -1.44
VPS41-207ENST00000439468 TRIM42Q8IWZ5 723 aa6.05□□□□□ -1.44
VPS41-207ENST00000439468 FAM20CQ8IXL6 584 aa6.05□□□□□ -1.44
VPS41-207ENST00000439468 TMPRSS13Q9BYE2 586 aa6.05□□□□□ -1.44
VPS41-207ENST00000439468 GPN3Q9UHW5 284 aaPredicted RBP6.05□□□□□ -1.44
VPS41-207ENST00000439468 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.04□□□□□ -1.44
VPS41-207ENST00000439468 TREHO43280 583 aa6.04□□□□□ -1.44
VPS41-207ENST00000439468 DLGAP3O95886 979 aa6.04□□□□□ -1.44
VPS41-207ENST00000439468 B3GALT4O96024 378 aa6.04□□□□□ -1.44
VPS41-207ENST00000439468 DRD2P14416 443 aa6.04□□□□□ -1.44
VPS41-207ENST00000439468 MAP4P27816 1152 aaKnown RBP6.04□□□□□ -1.44
VPS41-207ENST00000439468 RBM25P49756 843 aaKnown RBP6.04□□□□□ -1.44
VPS41-207ENST00000439468 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS41-207ENST00000439468 SGO2Q562F6 1265 aa6.04□□□□□ -1.44
VPS41-207ENST00000439468 AKAP4Q5JQC9 854 aa6.04□□□□□ -1.44
VPS41-207ENST00000439468 PRPF40BQ6NWY9 871 aaKnown RBP6.04□□□□□ -1.44
VPS41-207ENST00000439468 ZFYVE1Q9HBF4 777 aa6.04□□□□□ -1.44
VPS41-207ENST00000439468 ZFP64Q9NPA5 681 aa6.04□□□□□ -1.44
VPS41-207ENST00000439468 HIF3AQ9Y2N7 669 aa6.04□□□□□ -1.44
VPS41-207ENST00000439468 ATP2B2Q01814 1243 aa6.03□□□□□ -1.44
VPS41-207ENST00000439468 PTPN12Q05209 780 aaKnown RBP6.03□□□□□ -1.44
VPS41-207ENST00000439468 NFIAQ12857 509 aa6.03□□□□□ -1.44
VPS41-207ENST00000439468 ENOX2Q16206 610 aaKnown RBP6.03□□□□□ -1.44
VPS41-207ENST00000439468 NPAS4Q8IUM7 802 aa6.03□□□□□ -1.44
VPS41-207ENST00000439468 CLEC10AQ8IUN9 316 aa6.03□□□□□ -1.44
VPS41-207ENST00000439468 SMG8Q8ND04 991 aaKnown RBP6.03□□□□□ -1.44
VPS41-207ENST00000439468 ASB16Q96NS5 453 aa6.03□□□□□ -1.44
VPS41-207ENST00000439468 BCO2Q9BYV7 579 aa6.03□□□□□ -1.44
VPS41-207ENST00000439468 SUGCTQ9HAC7 445 aa6.03□□□□□ -1.44
VPS41-207ENST00000439468 AP4E1Q9UPM8 1137 aa6.03□□□□□ -1.44
VPS41-207ENST00000439468 AKAP2Q9Y2D5 859 aa6.03□□□□□ -1.44
VPS41-207ENST00000439468 ECEL1O95672 775 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 CTSBP07858 339 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 RAB6AP20340 208 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 AP3B2Q13367 1082 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 LRP8Q14114 963 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 DSC3Q14574 896 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 NFKBIBQ15653 356 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 ARTNQ5T4W7 220 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 NXPE4Q6UWF7 544 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 NBPF11Q86T75 865 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 GLIS3Q8NEA6 775 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 FAM83CQ9BQN1 747 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 TRIM56Q9BRZ2 755 aaKnown RBP6.02□□□□□ -1.45
VPS41-207ENST00000439468 YIPF2Q9BWQ6 316 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 KRTAP9-2Q9BYQ4 174 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 ZC3H12CQ9C0D7 883 aaKnown RBP6.02□□□□□ -1.45
VPS41-207ENST00000439468 RNF112Q9ULX5 631 aa6.02□□□□□ -1.45
VPS41-207ENST00000439468 UNCXA6NJT0 531 aa6.01□□□□□ -1.45
VPS41-207ENST00000439468 TIAF1O95411 115 aa6.01□□□□□ -1.45
VPS41-207ENST00000439468 TGFB1P01137 390 aa6.01□□□□□ -1.45
VPS41-207ENST00000439468 ADH5P11766 374 aa6.01□□□□□ -1.45
VPS41-207ENST00000439468 SSTR4P31391 388 aa6.01□□□□□ -1.45
VPS41-207ENST00000439468 PPP2R3AQ06190 1150 aa6.01□□□□□ -1.45
VPS41-207ENST00000439468 SOX4Q06945 474 aaPredicted RBP6.01□□□□□ -1.45
VPS41-207ENST00000439468 RPS26P11Q5JNZ5 115 aaPredicted RBP6.01□□□□□ -1.45
VPS41-207ENST00000439468 RNF43Q68DV7 783 aa6.01□□□□□ -1.45
VPS41-207ENST00000439468 DYMQ7RTS9 669 aa6.01□□□□□ -1.45
VPS41-207ENST00000439468 SLC51AQ86UW1 340 aa6.01□□□□□ -1.45
VPS41-207ENST00000439468 FBLIM1Q8WUP2 373 aa6.01□□□□□ -1.45
VPS41-207ENST00000439468 DBNDD2Q9BQY9 259 aa6.01□□□□□ -1.45
VPS41-207ENST00000439468 NRSN2Q9GZP1 204 aa6.01□□□□□ -1.45
VPS41-207ENST00000439468 FAM95CA0A1B0GW59 222 aa6□□□□□ -1.45
VPS41-207ENST00000439468 HNRNPUQ00839 825 aaKnown RBP eCLIP6□□□□□ -1.45
VPS41-207ENST00000439468 FAAP100Q0VG06 881 aa6□□□□□ -1.45
VPS41-207ENST00000439468 PAOXQ6QHF9 649 aa6□□□□□ -1.45
VPS41-207ENST00000439468 FBXL6Q8N531 539 aa6□□□□□ -1.45
VPS41-207ENST00000439468 C2CD4AQ8NCU7 369 aaPredicted RBP6□□□□□ -1.45
VPS41-207ENST00000439468 GIMAP7Q8NHV1 300 aa6□□□□□ -1.45
VPS41-207ENST00000439468 MFSD14AQ96MC6 490 aa6□□□□□ -1.45
VPS41-207ENST00000439468 SETDB2Q96T68 719 aa6□□□□□ -1.45
VPS41-207ENST00000439468 RNF19AQ9NV58 838 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms