RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 AEBP2Q6ZN18 517 aaPredicted RBP19.81■□□□□ 0.76
VPS41-207ENST00000439468 CHIC1Q5VXU3 224 aa19.18■□□□□ 0.66
VPS41-207ENST00000439468 SENP3Q9H4L4 574 aaPredicted RBP16.89■□□□□ 0.29
VPS41-207ENST00000439468 PHF23Q9BUL5 403 aaPredicted RBP16.82■□□□□ 0.28
VPS41-207ENST00000439468 FOXD1Q16676 465 aa15.67■□□□□ 0.1
VPS41-207ENST00000439468 PLPPR3Q6T4P5 718 aa15.53■□□□□ 0.08
VPS41-207ENST00000439468 ADRA2BP18089 450 aa14.94□□□□□ -0.02
VPS41-207ENST00000439468 PPP6R1Q9UPN7 881 aa14.92□□□□□ -0.02
VPS41-207ENST00000439468 PIAS4Q8N2W9 510 aaPredicted RBP14.8□□□□□ -0.04
VPS41-207ENST00000439468 POTEDQ86YR6 584 aa14.71□□□□□ -0.05
VPS41-207ENST00000439468 MSH5O43196 834 aa14.56□□□□□ -0.08
VPS41-207ENST00000439468 SCAF1Q9H7N4 1312 aaKnown RBP13.69□□□□□ -0.22
VPS41-207ENST00000439468 PPP4R3CPQ6ZMV5 832 aa13.66□□□□□ -0.22
VPS41-207ENST00000439468 MAPK8IP2Q13387 824 aaPredicted RBP13.6□□□□□ -0.23
VPS41-207ENST00000439468 DMRT2Q9Y5R5 561 aa13.42□□□□□ -0.26
VPS41-207ENST00000439468 CNKSR2Q8WXI2 1034 aa13.31□□□□□ -0.28
VPS41-207ENST00000439468 NCBP3Q53F19 620 aaKnown RBP13.28□□□□□ -0.28
VPS41-207ENST00000439468 KCNA4P22459 653 aa13.13□□□□□ -0.31
VPS41-207ENST00000439468 RNF216Q9NWF9 866 aaPredicted RBP13.08□□□□□ -0.32
VPS41-207ENST00000439468 NPM3O75607 178 aaKnown RBP13.04□□□□□ -0.32
VPS41-207ENST00000439468 HOXD11P31277 338 aaPredicted RBP13.04□□□□□ -0.32
VPS41-207ENST00000439468 DCAF8L1A6NGE4 600 aa13.01□□□□□ -0.33
VPS41-207ENST00000439468 DNAJC5BQ9UF47 199 aa12.56□□□□□ -0.4
VPS41-207ENST00000439468 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.55□□□□□ -0.46e-7■■□□□ 12.6
VPS41-207ENST00000439468 SLC4A1APQ9BWU0 796 aaKnown RBP12.5□□□□□ -0.41
VPS41-207ENST00000439468 CACNB1Q02641 598 aaPredicted RBP12.47□□□□□ -0.41
VPS41-207ENST00000439468 RNF39Q9H2S5 420 aa12.42□□□□□ -0.42
VPS41-207ENST00000439468 SLC4A2P04920 1241 aa12.32□□□□□ -0.44
VPS41-207ENST00000439468 C1QBPQ07021 282 aaKnown RBP12.28□□□□□ -0.44
VPS41-207ENST00000439468 U3KPZ7 1027 aaPredicted RBP12.25□□□□□ -0.45
VPS41-207ENST00000439468 FOXD4L1Q9NU39 408 aa12.15□□□□□ -0.46
VPS41-207ENST00000439468 MYCNP04198 464 aaPredicted RBP12.08□□□□□ -0.48
VPS41-207ENST00000439468 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.07□□□□□ -0.48
VPS41-207ENST00000439468 HNRNPUL2Q1KMD3 747 aaKnown RBP12.07□□□□□ -0.48
VPS41-207ENST00000439468 ZBTB22O15209 634 aa12.05□□□□□ -0.48
VPS41-207ENST00000439468 CAPN15O75808 1086 aa12.02□□□□□ -0.49
VPS41-207ENST00000439468 APLP2Q06481 763 aa12.02□□□□□ -0.49
VPS41-207ENST00000439468 SAMD1Q6SPF0 538 aaPredicted RBP12.02□□□□□ -0.49
VPS41-207ENST00000439468 EHMT2Q96KQ7 1210 aa11.99□□□□□ -0.49
VPS41-207ENST00000439468 SPINK5Q9NQ38 1064 aaPredicted RBP11.99□□□□□ -0.49
VPS41-207ENST00000439468 TRHP20396 242 aaPredicted RBP11.91□□□□□ -0.5
VPS41-207ENST00000439468 ZNF219Q9P2Y4 722 aaPredicted RBP11.86□□□□□ -0.51
VPS41-207ENST00000439468 CSRNP3Q8WYN3 585 aa11.82□□□□□ -0.52
VPS41-207ENST00000439468 DSG3P32926 999 aa11.77□□□□□ -0.53
VPS41-207ENST00000439468 ABCB7O75027 752 aa11.76□□□□□ -0.53
VPS41-207ENST00000439468 ATF5Q9Y2D1 282 aaPredicted RBP11.74□□□□□ -0.53
VPS41-207ENST00000439468 ATXN8OSP0DMR3 200 aa11.7□□□□□ -0.54
VPS41-207ENST00000439468 POLA2Q14181 598 aa11.62□□□□□ -0.55
VPS41-207ENST00000439468 ZBTB12Q9Y330 459 aaPredicted RBP11.43□□□□□ -0.58
VPS41-207ENST00000439468 POTEHQ6S545 545 aa11.41□□□□□ -0.58
VPS41-207ENST00000439468 FBLN2P98095 1184 aa11.34□□□□□ -0.59
VPS41-207ENST00000439468 OSCARQ8IYS5 282 aa11.26□□□□□ -0.61
VPS41-207ENST00000439468 RBM42Q9BTD8 480 aaKnown RBP11.26□□□□□ -0.61
VPS41-207ENST00000439468 MKRN4PQ13434 485 aaPredicted RBP11.21□□□□□ -0.61
VPS41-207ENST00000439468 SPDYE2BA6NHP3 402 aa11.07□□□□□ -0.64
VPS41-207ENST00000439468 SPDYE6P0CI01 402 aa11.07□□□□□ -0.64
VPS41-207ENST00000439468 SPDYE2Q495Y8 402 aa11.07□□□□□ -0.64
VPS41-207ENST00000439468 AKT1S1Q96B36 256 aa11.05□□□□□ -0.64
VPS41-207ENST00000439468 ZNF692Q9BU19 519 aaPredicted RBP11.05□□□□□ -0.64
VPS41-207ENST00000439468 REM2Q8IYK8 340 aaPredicted RBP10.95□□□□□ -0.66
VPS41-207ENST00000439468 SSUH2Q9Y2M2 353 aa10.94□□□□□ -0.66
VPS41-207ENST00000439468 SPDYE4A6NLX3 237 aa10.93□□□□□ -0.66
VPS41-207ENST00000439468 PABPN1Q86U42 306 aaKnown RBP eCLIP10.89□□□□□ -0.67
VPS41-207ENST00000439468 CHRDL2Q6WN34 429 aa10.86□□□□□ -0.67
VPS41-207ENST00000439468 CLEC11AQ9Y240 323 aa10.85□□□□□ -0.67
VPS41-207ENST00000439468 PITPNM1O00562 1244 aa10.84□□□□□ -0.67
VPS41-207ENST00000439468 SPDYE1Q8NFV5 336 aaPredicted RBP10.82□□□□□ -0.68
VPS41-207ENST00000439468 FKBP8Q14318 412 aa10.78□□□□□ -0.68
VPS41-207ENST00000439468 PRR29P0C7W0 189 aa10.68□□□□□ -0.7
VPS41-207ENST00000439468 PIP4P2Q8N4L2 257 aa10.67□□□□□ -0.7
VPS41-207ENST00000439468 STAG3Q9UJ98 1225 aa10.66□□□□□ -0.7
VPS41-207ENST00000439468 FXR2P51116 673 aaKnown RBP eCLIP10.63□□□□□ -0.71
VPS41-207ENST00000439468 PROM2Q8N271 834 aa10.6□□□□□ -0.71
VPS41-207ENST00000439468 PRKAR2AP13861 404 aaKnown RBP10.59□□□□□ -0.71
VPS41-207ENST00000439468 CHADLQ6NUI6 762 aa10.56□□□□□ -0.72
VPS41-207ENST00000439468 SP7Q8TDD2 431 aaPredicted RBP10.47□□□□□ -0.73
VPS41-207ENST00000439468 CREBZFQ9NS37 354 aa10.45□□□□□ -0.74
VPS41-207ENST00000439468 HAX1O00165 279 aa10.43□□□□□ -0.74
VPS41-207ENST00000439468 FBXO3Q9UK99 471 aa10.43□□□□□ -0.74
VPS41-207ENST00000439468 PLEKHG5O94827 1062 aa10.42□□□□□ -0.74
VPS41-207ENST00000439468 MIER1Q8N108 512 aa10.41□□□□□ -0.74
VPS41-207ENST00000439468 FARP1Q9Y4F1 1045 aaPredicted RBP10.41□□□□□ -0.74
VPS41-207ENST00000439468 PLCD3Q8N3E9 789 aa10.4□□□□□ -0.74
VPS41-207ENST00000439468 NPM1P06748 294 aaKnown RBP eCLIP10.32□□□□□ -0.76
VPS41-207ENST00000439468 CD44P16070 742 aaKnown RBP10.29□□□□□ -0.76
VPS41-207ENST00000439468 C19orf67A6NJJ6 358 aa10.28□□□□□ -0.76
VPS41-207ENST00000439468 VASPP50552 380 aaPredicted RBP10.28□□□□□ -0.76
VPS41-207ENST00000439468 MNX1P50219 401 aaPredicted RBP10.27□□□□□ -0.77
VPS41-207ENST00000439468 ZBTB47Q9UFB7 747 aaPredicted RBP10.26□□□□□ -0.77
VPS41-207ENST00000439468 EVX2Q03828 476 aa10.25□□□□□ -0.77
VPS41-207ENST00000439468 PAK3O75914 559 aaPredicted RBP10.24□□□□□ -0.77
VPS41-207ENST00000439468 KLHL34Q8N239 644 aa10.23□□□□□ -0.77
VPS41-207ENST00000439468 ZRANB1Q9UGI0 708 aa10.21□□□□□ -0.77
VPS41-207ENST00000439468 TSPYL2Q9H2G4 693 aaPredicted RBP10.17□□□□□ -0.78
VPS41-207ENST00000439468 RASEFQ8IZ41 740 aa10.12□□□□□ -0.79
VPS41-207ENST00000439468 IFNLR1Q8IU57 520 aaPredicted RBP10.1□□□□□ -0.79
VPS41-207ENST00000439468 ZNF579Q8NAF0 562 aaKnown RBP10.1□□□□□ -0.79
VPS41-207ENST00000439468 NUBP1P53384 320 aa10.09□□□□□ -0.79
VPS41-207ENST00000439468 FAM212AQ96EL1 285 aa10.09□□□□□ -0.79
VPS41-207ENST00000439468 PHF12Q96QT6 1004 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms