RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 GSC2O15499 205 aa6.3□□□□□ -1.4
HMGB3P20-201ENST00000417997 DLGAP3O95886 979 aa6.3□□□□□ -1.4
HMGB3P20-201ENST00000417997 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.3□□□□□ -1.4
HMGB3P20-201ENST00000417997 BEND4Q6ZU67 534 aa6.3□□□□□ -1.4
HMGB3P20-201ENST00000417997 DDX54Q8TDD1 881 aaKnown RBP6.3□□□□□ -1.4
HMGB3P20-201ENST00000417997 RBCK1Q9BYM8 510 aa6.3□□□□□ -1.4
HMGB3P20-201ENST00000417997 DCTN4Q9UJW0 460 aa6.3□□□□□ -1.4
HMGB3P20-201ENST00000417997 RNF112Q9ULX5 631 aa6.3□□□□□ -1.4
HMGB3P20-201ENST00000417997 CC2D2AQ9P2K1 1620 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 MEGF11A6BM72 1044 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 EIF4EBP3O60516 100 aaPredicted RBP6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 CYP11A1P05108 521 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 DRD2P14416 443 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 MAOBP27338 520 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 SSTR4P31391 388 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 USP11P51784 963 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 NFIAQ12857 509 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 SGO2Q562F6 1265 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 TMC7Q7Z402 723 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 CLEC10AQ8IUN9 316 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 EPS8L3Q8TE67 593 aaKnown RBP6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 TMPRSS13Q9BYE2 586 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 PCMTD2Q9NV79 361 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 NLRP2Q9NX02 1062 aa6.29□□□□□ -1.4
HMGB3P20-201ENST00000417997 HYAL3O43820 417 aaPredicted RBP6.28□□□□□ -1.4
HMGB3P20-201ENST00000417997 ZNF157P51786 506 aaPredicted RBP6.28□□□□□ -1.4
HMGB3P20-201ENST00000417997 POU4F3Q15319 338 aa6.28□□□□□ -1.4
HMGB3P20-201ENST00000417997 EXOSC6Q5RKV6 272 aaKnown RBP6.28□□□□□ -1.4
HMGB3P20-201ENST00000417997 RNF43Q68DV7 783 aa6.28□□□□□ -1.4
HMGB3P20-201ENST00000417997 SLC51AQ86UW1 340 aa6.28□□□□□ -1.4
HMGB3P20-201ENST00000417997 CORO1BQ9BR76 489 aa6.28□□□□□ -1.4
HMGB3P20-201ENST00000417997 ZNF576Q9H609 170 aa6.28□□□□□ -1.4
HMGB3P20-201ENST00000417997 RAD18Q9NS91 495 aa6.28□□□□□ -1.4
HMGB3P20-201ENST00000417997 TRAK1Q9UPV9 953 aa6.28□□□□□ -1.4
HMGB3P20-201ENST00000417997 IVNS1ABPQ9Y6Y0 642 aa6.28□□□□□ -1.4
HMGB3P20-201ENST00000417997 TMEM238LA0A1B0GVL6 79 aa6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 IGHA2P01877 340 aa6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 MAP4P27816 1152 aaKnown RBP6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 GRM2Q14416 872 aa6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 AKAP4Q5JQC9 854 aa6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 PI16Q6UXB8 463 aa6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 SMG8Q8ND04 991 aaKnown RBP6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 ALKBH8Q96BT7 664 aaKnown RBP6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 FAM83CQ9BQN1 747 aa6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 DBNDD2Q9BQY9 259 aa6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 SUGCTQ9HAC7 445 aa6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 ABCB6Q9NP58 842 aa6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 HIF3AQ9Y2N7 669 aa6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 PRDM2Q13029 1718 aa6.27□□□□□ -1.41
HMGB3P20-201ENST00000417997 PNMA6FA0A0J9YX94 578 aa6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 B3GALT4O96024 378 aa6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 TGFB1P01137 390 aa6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 ITPKAP23677 461 aa6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 FCGRTP55899 365 aa6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 PLCB3Q01970 1234 aa6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 PDE3AQ14432 1141 aa6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 HP1BP3Q5SSJ5 553 aaPredicted RBP6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 DTHD1Q6ZMT9 781 aa6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 FBXL6Q8N531 539 aa6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 ZFYVE1Q9HBF4 777 aa6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 PPP4R2Q9NY27 417 aa6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 CCDC88BA6NC98 1476 aa6.26□□□□□ -1.41
HMGB3P20-201ENST00000417997 TIAF1O95411 115 aa6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 ECEL1O95672 775 aa6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 CTSBP07858 339 aa6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 SOX4Q06945 474 aaPredicted RBP6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 NFKBIBQ15653 356 aa6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 PRPF40BQ6NWY9 871 aaKnown RBP6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 DYMQ7RTS9 669 aa6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 SHKBP1Q8TBC3 707 aa6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 FBLIM1Q8WUP2 373 aa6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 MFSD14AQ96MC6 490 aa6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 TRIM56Q9BRZ2 755 aaKnown RBP6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 NRSN2Q9GZP1 204 aa6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 AP4E1Q9UPM8 1137 aa6.25□□□□□ -1.41
HMGB3P20-201ENST00000417997 NCAPD3P42695 1498 aa6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 FAM95CA0A1B0GW59 222 aa6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 WDR64B1ANS9 1081 aa6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 COBLO75128 1261 aa6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 ADH5P11766 374 aa6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 RAB6AP20340 208 aa6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 MAPK8P45983 427 aa6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 KCNA1Q09470 495 aa6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 PAOXQ6QHF9 649 aa6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 ZDHHC13Q8IUH4 622 aa6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 C2CD4AQ8NCU7 369 aaPredicted RBP6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 YIPF2Q9BWQ6 316 aa6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 ZC3H12CQ9C0D7 883 aaKnown RBP6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 ATG3Q9NT62 314 aa6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 GPN3Q9UHW5 284 aaPredicted RBP6.24□□□□□ -1.41
HMGB3P20-201ENST00000417997 TREHO43280 583 aa6.23□□□□□ -1.41
HMGB3P20-201ENST00000417997 GRIK1P39086 918 aa6.23□□□□□ -1.41
HMGB3P20-201ENST00000417997 PTPN12Q05209 780 aaKnown RBP6.23□□□□□ -1.41
HMGB3P20-201ENST00000417997 AP3B2Q13367 1082 aa6.23□□□□□ -1.41
HMGB3P20-201ENST00000417997 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.23□□□□□ -1.41
HMGB3P20-201ENST00000417997 CDPF1Q6NVV7 123 aa6.23□□□□□ -1.41
HMGB3P20-201ENST00000417997 ZSCAN29Q8IWY8 852 aaPredicted RBP6.23□□□□□ -1.41
HMGB3P20-201ENST00000417997 GIMAP7Q8NHV1 300 aa6.23□□□□□ -1.41
HMGB3P20-201ENST00000417997 BCO2Q9BYV7 579 aa6.23□□□□□ -1.41
HMGB3P20-201ENST00000417997 AKAP2Q9Y2D5 859 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms