RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ENGASEQ8NFI3 743 aa18.07■□□□□ 0.48
UPF3B-202ENST00000345865 DNAJC25Q9H1X3 360 aa18.07■□□□□ 0.48
UPF3B-202ENST00000345865 ORC3Q9UBD5 711 aaPredicted RBP18.07■□□□□ 0.48
UPF3B-202ENST00000345865 WDR19Q8NEZ3 1342 aa18.07■□□□□ 0.48
UPF3B-202ENST00000345865 FBXO18Q8NFZ0 1043 aa18.07■□□□□ 0.48
UPF3B-202ENST00000345865 AK7Q96M32 723 aa18.07■□□□□ 0.48
UPF3B-202ENST00000345865 ZNF396Q96N95 335 aaPredicted RBP18.07■□□□□ 0.48
UPF3B-202ENST00000345865 UTP14AQ9BVJ6 771 aaKnown RBP18.07■□□□□ 0.48
UPF3B-202ENST00000345865 COL4A1P02462 1669 aa18.07■□□□□ 0.48
UPF3B-202ENST00000345865 PHLPP1O60346 1717 aa18.07■□□□□ 0.48
UPF3B-202ENST00000345865 ATL3Q6DD88 541 aa18.06■□□□□ 0.48
UPF3B-202ENST00000345865 SPC24Q8NBT2 197 aa18.06■□□□□ 0.48
UPF3B-202ENST00000345865 KCNF1Q9H3M0 494 aa18.06■□□□□ 0.48
UPF3B-202ENST00000345865 EPB41L4AQ9HCS5 686 aaPredicted RBP18.06■□□□□ 0.48
UPF3B-202ENST00000345865 TACC3Q9Y6A5 838 aa18.06■□□□□ 0.48
UPF3B-202ENST00000345865 NRAPQ86VF7 1730 aa18.06■□□□□ 0.48
UPF3B-202ENST00000345865 B4E1Z4 1266 aa18.06■□□□□ 0.48
UPF3B-202ENST00000345865 POLR3DP05423 398 aaPredicted RBP18.06■□□□□ 0.48
UPF3B-202ENST00000345865 SASS6Q6UVJ0 657 aa18.06■□□□□ 0.48
UPF3B-202ENST00000345865 PIBF1Q8WXW3 757 aa18.06■□□□□ 0.48
UPF3B-202ENST00000345865 CHMP4CQ96CF2 233 aa18.06■□□□□ 0.48
UPF3B-202ENST00000345865 C8orf76Q96K31 380 aa18.06■□□□□ 0.48
UPF3B-202ENST00000345865 NEDD4P46934 1319 aa18.06■□□□□ 0.48
UPF3B-202ENST00000345865 DOCK2Q92608 1830 aa18.06■□□□□ 0.48
UPF3B-202ENST00000345865 RXRAP19793 462 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 MAGEB6Q8N7X4 407 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 MPHOSPH8Q99549 860 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 PCDHA7Q9UN72 937 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 ANGEL1Q9UNK9 670 aaKnown RBP18.05■□□□□ 0.48
UPF3B-202ENST00000345865 CLIC4Q9Y696 253 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.05■□□□□ 0.48
UPF3B-202ENST00000345865 KIF28PB7ZC32 967 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 SH2B2O14492 632 aaPredicted RBP18.05■□□□□ 0.48
UPF3B-202ENST00000345865 DHX16O60231 1041 aaKnown RBP18.05■□□□□ 0.48
UPF3B-202ENST00000345865 NTSR2O95665 410 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 TPM2P07951 284 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 SLC5A1P13866 664 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 ME1P48163 572 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 ZNF165P49910 485 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 TRDNQ13061 729 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 AIDAQ96BJ3 306 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 AIFM3Q96NN9 605 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 CDCA7Q9BWT1 371 aaPredicted RBP18.05■□□□□ 0.48
UPF3B-202ENST00000345865 RTEL1Q9NZ71 1219 aa18.05■□□□□ 0.48
UPF3B-202ENST00000345865 A0A087WWV3 80 aa18.04■□□□□ 0.48
UPF3B-202ENST00000345865 CPLX1O14810 134 aa18.04■□□□□ 0.48
UPF3B-202ENST00000345865 BCAMP50895 628 aa18.04■□□□□ 0.48
UPF3B-202ENST00000345865 TDRD7Q8NHU6 1098 aaKnown RBP18.04■□□□□ 0.48
UPF3B-202ENST00000345865 RREB1Q92766 1687 aa18.04■□□□□ 0.48
UPF3B-202ENST00000345865 CDC27P30260 824 aa18.04■□□□□ 0.48
UPF3B-202ENST00000345865 LINC00301Q8NCQ3 95 aa18.04■□□□□ 0.48
UPF3B-202ENST00000345865 NIP7Q9Y221 180 aaKnown RBP eCLIP18.04■□□□□ 0.48
UPF3B-202ENST00000345865 KCNQ2O43526 872 aa18.03■□□□□ 0.48
UPF3B-202ENST00000345865 MBD4O95243 580 aa18.03■□□□□ 0.48
UPF3B-202ENST00000345865 TERF1P54274 439 aa18.03■□□□□ 0.48
UPF3B-202ENST00000345865 NOLC1Q14978 699 aaKnown RBP eCLIP18.03■□□□□ 0.48
UPF3B-202ENST00000345865 C11orf57Q6ZUT1 292 aaPredicted RBP18.03■□□□□ 0.48
UPF3B-202ENST00000345865 IFNL3Q8IZI9 196 aa18.03■□□□□ 0.48
UPF3B-202ENST00000345865 FSIP1Q8NA03 581 aa18.03■□□□□ 0.48
UPF3B-202ENST00000345865 IGDCC4Q8TDY8 1250 aa18.03■□□□□ 0.48
UPF3B-202ENST00000345865 ARMT1Q9H993 441 aa18.03■□□□□ 0.48
UPF3B-202ENST00000345865 THRAP3Q9Y2W1 955 aaKnown RBP18.03■□□□□ 0.48
UPF3B-202ENST00000345865 FAM160A1Q05DH4 1040 aa18.03■□□□□ 0.48
UPF3B-202ENST00000345865 ALX1Q15699 326 aa18.03■□□□□ 0.48
UPF3B-202ENST00000345865 APOA5Q6Q788 366 aa18.03■□□□□ 0.48
UPF3B-202ENST00000345865 ERCC4Q92889 916 aaPredicted RBP18.03■□□□□ 0.48
UPF3B-202ENST00000345865 ZMYM6O95789 1325 aa18.02■□□□□ 0.48
UPF3B-202ENST00000345865 PATL2C9JE40 543 aaKnown RBP18.02■□□□□ 0.48
UPF3B-202ENST00000345865 PRKAB2O43741 272 aa18.02■□□□□ 0.48
UPF3B-202ENST00000345865 CTDSPL2Q05D32 466 aa18.02■□□□□ 0.48
UPF3B-202ENST00000345865 IQCB1Q15051 598 aa18.02■□□□□ 0.48
UPF3B-202ENST00000345865 CCDC152Q4G0S7 254 aa18.02■□□□□ 0.48
UPF3B-202ENST00000345865 MYSM1Q5VVJ2 828 aa18.02■□□□□ 0.48
UPF3B-202ENST00000345865 CCDC73Q6ZRK6 1079 aa18.02■□□□□ 0.48
UPF3B-202ENST00000345865 PYCARDQ9ULZ3 195 aa18.02■□□□□ 0.48
UPF3B-202ENST00000345865 GSG1L2A8MUP6 293 aa18.01■□□□□ 0.47
UPF3B-202ENST00000345865 KIF23Q02241 960 aaPredicted RBP18.01■□□□□ 0.47
UPF3B-202ENST00000345865 MAP3K12Q12852 859 aa18.01■□□□□ 0.47
UPF3B-202ENST00000345865 PARP10Q53GL7 1025 aa18.01■□□□□ 0.47
UPF3B-202ENST00000345865 ADALQ6DHV7 355 aa18.01■□□□□ 0.47
UPF3B-202ENST00000345865 FMR1NBQ8N0W7 255 aaPredicted RBP18.01■□□□□ 0.47
UPF3B-202ENST00000345865 A0A1B0GVL5 298 aa18.01■□□□□ 0.47
UPF3B-202ENST00000345865 WTIPA6NIX2 430 aaPredicted RBP18.01■□□□□ 0.47
UPF3B-202ENST00000345865 METAP2P50579 478 aaKnown RBP eCLIP18.01■□□□□ 0.47
UPF3B-202ENST00000345865 PLA2G4DQ86XP0 818 aa18.01■□□□□ 0.47
UPF3B-202ENST00000345865 CCDC144CPQ8IYA2 1237 aa18.01■□□□□ 0.47
UPF3B-202ENST00000345865 PHKBQ93100 1093 aa18.01■□□□□ 0.47
UPF3B-202ENST00000345865 LY9Q9HBG7 655 aa18.01■□□□□ 0.47
UPF3B-202ENST00000345865 FAM217BQ9NTX9 383 aaPredicted RBP18.01■□□□□ 0.47
UPF3B-202ENST00000345865 ZSWIM5Q9P217 1185 aa18.01■□□□□ 0.47
UPF3B-202ENST00000345865 SPATA31A5Q5VU36 1347 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 SPATA31A7Q8IWB4 1347 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 CHD4Q14839 1912 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 CHRNDQ07001 517 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 MICU3Q86XE3 530 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 MYL10Q9BUA6 226 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 POLR3EQ9NVU0 708 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 UBE2Q2LH0YL09 131 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 CTAGE5O15320 804 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 KINO60870 393 aaKnown RBP18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 167.2 ms