RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 FBXO18Q8NFZ0 1043 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 CFAP45Q9UL16 551 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 ABCC6O95255 1503 aa12.48□□□□□ -0.41
USP28-201ENST00000003302 BECN2A8MW95 431 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 PFKFB1P16118 471 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 PHKA1P46020 1223 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 MYSM1Q5VVJ2 828 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 NAA16Q6N069 864 aaPredicted RBP12.47□□□□□ -0.41
USP28-201ENST00000003302 CHMP4CQ96CF2 233 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 ZSCAN16Q9H4T2 348 aaPredicted RBP12.47□□□□□ -0.41
USP28-201ENST00000003302 MST1RQ04912 1400 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 COL4A1P02462 1669 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 WNT7AO00755 349 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 PRKAB2O43741 272 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 FAM217BQ9NTX9 383 aaPredicted RBP12.47□□□□□ -0.41
USP28-201ENST00000003302 IQSEC3Q9UPP2 1182 aaPredicted RBP12.47□□□□□ -0.41
USP28-201ENST00000003302 ZNF202O95125 648 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 STX1AQ16623 288 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 TMC6Q7Z403 805 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 MED15Q96RN5 788 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 INTS13Q9NVM9 706 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 NUP188Q5SRE5 1749 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 FAM205CA6NFA0 338 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 RBM6P78332 1123 aaKnown RBP12.47□□□□□ -0.41
USP28-201ENST00000003302 CTDSPL2Q05D32 466 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 SF3A1Q15459 793 aaKnown RBP12.47□□□□□ -0.41
USP28-201ENST00000003302 KIAA1468Q9P260 1216 aa12.47□□□□□ -0.41
USP28-201ENST00000003302 NOM1Q5C9Z4 860 aaKnown RBP12.46□□□□□ -0.41
USP28-201ENST00000003302 CCAR2Q8N163 923 aaKnown RBP12.46□□□□□ -0.41
USP28-201ENST00000003302 C8orf76Q96K31 380 aa12.46□□□□□ -0.41
USP28-201ENST00000003302 KCPQ6ZWJ8 1503 aa12.46□□□□□ -0.41
USP28-201ENST00000003302 SMC2O95347 1197 aa12.46□□□□□ -0.41
USP28-201ENST00000003302 IL15P40933 162 aaPredicted RBP12.46□□□□□ -0.41
USP28-201ENST00000003302 KIF23Q02241 960 aaPredicted RBP12.46□□□□□ -0.41
USP28-201ENST00000003302 ERCC6LQ2NKX8 1250 aa12.46□□□□□ -0.41
USP28-201ENST00000003302 CCDC73Q6ZRK6 1079 aa12.46□□□□□ -0.41
USP28-201ENST00000003302 MRPS27Q92552 414 aaKnown RBP12.46□□□□□ -0.41
USP28-201ENST00000003302 MAP7D2Q96T17 732 aa12.46□□□□□ -0.41
USP28-201ENST00000003302 HELLSQ9NRZ9 838 aa12.46□□□□□ -0.41
USP28-201ENST00000003302 RIC1Q4ADV7 1423 aa12.46□□□□□ -0.41
USP28-201ENST00000003302 IDH1O75874 414 aaKnown RBP12.46□□□□□ -0.42
USP28-201ENST00000003302 FAM177A1Q8N128 213 aaPredicted RBP12.46□□□□□ -0.42
USP28-201ENST00000003302 ADAMTS3O15072 1205 aa12.46□□□□□ -0.42
USP28-201ENST00000003302 DMTNQ08495 405 aa12.46□□□□□ -0.42
USP28-201ENST00000003302 GORABQ5T7V8 394 aa12.46□□□□□ -0.42
USP28-201ENST00000003302 GOLGA6L6A8MZA4 724 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 SYT10Q6XYQ8 523 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 KCNJ14Q9UNX9 436 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 ZBTB22O15209 634 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 STK38Q15208 465 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 LONRF3Q496Y0 759 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 SLC9C2Q5TAH2 1124 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 SPTLC2O15270 562 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 TTC39AQ5SRH9 613 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 SARM1Q6SZW1 724 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 VPS37DQ86XT2 251 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 SMAP1Q8IYB5 467 aaPredicted RBP12.45□□□□□ -0.42
USP28-201ENST00000003302 TRMT44Q8IYL2 757 aaKnown RBP12.45□□□□□ -0.42
USP28-201ENST00000003302 EPB41L4AQ9HCS5 686 aaPredicted RBP12.45□□□□□ -0.42
USP28-201ENST00000003302 RTEL1Q9NZ71 1219 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 CEP126Q9P2H0 1117 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 TBC1D2BQ9UPU7 963 aa12.45□□□□□ -0.42
USP28-201ENST00000003302 ADALQ6DHV7 355 aa12.44□□□□□ -0.42
USP28-201ENST00000003302 ZNF274Q96GC6 653 aaPredicted RBP12.44□□□□□ -0.42
USP28-201ENST00000003302 MRFAP1L1Q96HT8 127 aa12.44□□□□□ -0.42
USP28-201ENST00000003302 ATP2B1P20020 1258 aa12.44□□□□□ -0.42
USP28-201ENST00000003302 CCDC112Q8NEF3 446 aa12.44□□□□□ -0.42
USP28-201ENST00000003302 ZCRB1Q8TBF4 217 aaKnown RBP12.44□□□□□ -0.42
USP28-201ENST00000003302 IRX2Q9BZI1 471 aaPredicted RBP12.44□□□□□ -0.42
USP28-201ENST00000003302 SMTNL1A8MU46 457 aa12.44□□□□□ -0.42
USP28-201ENST00000003302 PRR29P0C7W0 189 aa12.44□□□□□ -0.42
USP28-201ENST00000003302 CCDC57Q2TAC2 916 aa12.44□□□□□ -0.42
USP28-201ENST00000003302 LLPHQ9BRT6 129 aaKnown RBP12.44□□□□□ -0.42
USP28-201ENST00000003302 SLIT2O94813 1529 aa12.44□□□□□ -0.42
USP28-201ENST00000003302 APPP05067 770 aa12.44□□□□□ -0.42
USP28-201ENST00000003302 NR5A1Q13285 461 aa12.44□□□□□ -0.42
USP28-201ENST00000003302 METTL16Q86W50 562 aaKnown RBP12.44□□□□□ -0.42
USP28-201ENST00000003302 PIGBQ92521 554 aa12.44□□□□□ -0.42
USP28-201ENST00000003302 PRDM11Q9NQV5 511 aa12.44□□□□□ -0.42
USP28-201ENST00000003302 ATF3P18847 181 aa12.43□□□□□ -0.42
USP28-201ENST00000003302 ITGA6P23229 1130 aa12.43□□□□□ -0.42
USP28-201ENST00000003302 EARS2Q5JPH6 523 aaKnown RBP12.43□□□□□ -0.42
USP28-201ENST00000003302 ISCA1Q9BUE6 129 aa12.43□□□□□ -0.42
USP28-201ENST00000003302 OXER1Q8TDS5 423 aa12.43□□□□□ -0.42
USP28-201ENST00000003302 PPP1R13BQ96KQ4 1090 aa12.43□□□□□ -0.42
USP28-201ENST00000003302 RIPOR2Q9Y4F9 1068 aa12.43□□□□□ -0.42
USP28-201ENST00000003302 ZNF532Q9HCE3 1301 aa12.43□□□□□ -0.42
USP28-201ENST00000003302 PTPAQ15257 358 aa12.43□□□□□ -0.42
USP28-201ENST00000003302 PTPN14Q15678 1187 aa12.43□□□□□ -0.42
USP28-201ENST00000003302 NTRK3Q16288 839 aa12.43□□□□□ -0.42
USP28-201ENST00000003302 PDILTQ8N807 584 aa12.43□□□□□ -0.42
USP28-201ENST00000003302 HDAC5Q9UQL6 1122 aa12.43□□□□□ -0.42
USP28-201ENST00000003302 ECM29Q5VYK3 1845 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 TOB1P50616 345 aaPredicted RBP12.42□□□□□ -0.42
USP28-201ENST00000003302 EVCP57679 992 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 FMR1Q06787 632 aaKnown RBP eCLIP12.42□□□□□ -0.42
USP28-201ENST00000003302 ANO1Q5XXA6 986 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 TTLL11Q8NHH1 800 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 C4AP0C0L4 1744 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 C4BP0C0L5 1744 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms