RNA–Protein interactions for RNA: ENSMUST00000108530.1

Nup88-202, Transcript of Nuclear pore complex protein Nup88, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Nup88, Length 2,389 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-202ENSMUST00000108530 Krt40Q6IFX3 439 aa17.43■□□□□ 0.38
Nup88-202ENSMUST00000108530 Efcc1Q9JJF6 558 aa17.43■□□□□ 0.38
Nup88-202ENSMUST00000108530 Aox1O54754 1333 aa17.43■□□□□ 0.38
Nup88-202ENSMUST00000108530 Bnip3O55003 187 aa17.43■□□□□ 0.38
Nup88-202ENSMUST00000108530 NaspQ99MD9 773 aaKnown RBP17.43■□□□□ 0.38
Nup88-202ENSMUST00000108530 Myo3bQ1EG27 1305 aa17.42■□□□□ 0.38
Nup88-202ENSMUST00000108530 NesQ6P5H2 1864 aaKnown RBP17.42■□□□□ 0.38
Nup88-202ENSMUST00000108530 Prss40A6H6T1 365 aa17.42■□□□□ 0.38
Nup88-202ENSMUST00000108530 Tnni2P13412 182 aa17.42■□□□□ 0.38
Nup88-202ENSMUST00000108530 NppbP40753 121 aa17.42■□□□□ 0.38
Nup88-202ENSMUST00000108530 Psd3Q2PFD7 1037 aa17.42■□□□□ 0.38
Nup88-202ENSMUST00000108530 Ccdc51Q3URS9 406 aa17.42■□□□□ 0.38
Nup88-202ENSMUST00000108530 Leo1Q5XJE5 667 aa17.42■□□□□ 0.38
Nup88-202ENSMUST00000108530 Rufy2Q8R4C2 606 aa17.42■□□□□ 0.38
Nup88-202ENSMUST00000108530 Slfn1Q9Z0I7 337 aa17.42■□□□□ 0.38
Nup88-202ENSMUST00000108530 Ythdc1E9Q5K9 736 aaKnown RBP17.41■□□□□ 0.38
Nup88-202ENSMUST00000108530 Abl1P00520 1123 aa17.41■□□□□ 0.38
Nup88-202ENSMUST00000108530 Ifit1Q64282 463 aa17.41■□□□□ 0.38
Nup88-202ENSMUST00000108530 Pcdhb22Q91XZ8 794 aa17.41■□□□□ 0.38
Nup88-202ENSMUST00000108530 RarsQ9D0I9 660 aaKnown RBP17.41■□□□□ 0.38
Nup88-202ENSMUST00000108530 Odf2lQ9D478 642 aa17.41■□□□□ 0.38
Nup88-202ENSMUST00000108530 ImpactO55091 318 aa17.4■□□□□ 0.38
Nup88-202ENSMUST00000108530 Limch1Q3UH68 1057 aa17.4■□□□□ 0.38
Nup88-202ENSMUST00000108530 Wdr93Q402B2 695 aa17.4■□□□□ 0.38
Nup88-202ENSMUST00000108530 Zbtb22Q9Z0G7 638 aa17.4■□□□□ 0.38
Nup88-202ENSMUST00000108530 Znf326O88291 580 aa17.4■□□□□ 0.38
Nup88-202ENSMUST00000108530 Atp6v0a2P15920 856 aa17.4■□□□□ 0.38
Nup88-202ENSMUST00000108530 HelbQ6NVF4 1074 aa17.4■□□□□ 0.38
Nup88-202ENSMUST00000108530 Kcnn1Q9EQR3 537 aa17.4■□□□□ 0.38
Nup88-202ENSMUST00000108530 Cxcl11Q9JHH5 100 aa17.4■□□□□ 0.38
Nup88-202ENSMUST00000108530 Otop3Q80UF9 577 aa17.39■□□□□ 0.38
Nup88-202ENSMUST00000108530 Ano1Q8BHY3 960 aa17.39■□□□□ 0.38
Nup88-202ENSMUST00000108530 DymQ8CHY3 669 aa17.39■□□□□ 0.38
Nup88-202ENSMUST00000108530 Cd22P35329 862 aa17.39■□□□□ 0.37
Nup88-202ENSMUST00000108530 Dnajc2P54103 621 aaKnown RBP17.39■□□□□ 0.37
Nup88-202ENSMUST00000108530 Smarcc2Q6PDG5 1213 aa17.39■□□□□ 0.37
Nup88-202ENSMUST00000108530 Krt84Q99M73 603 aa17.39■□□□□ 0.37
Nup88-202ENSMUST00000108530 Dennd3A2RT67 1274 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Casp12O08736 419 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Rgs9O54828 675 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Pde6aP27664 859 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Spata5Q3UMC0 893 aaKnown RBP17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Ubash3aQ3V3E1 624 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Ttc12Q8BW49 704 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Uba5Q8VE47 403 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Pde3aQ9Z0X4 1141 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Spata31d1bE9QA57 1361 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 CgnP59242 1191 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Gja5Q01231 358 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Cnnm3Q32NY4 713 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Ccdc174Q3U155 467 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 1700018B08RikQ9DA83 213 aa17.38■□□□□ 0.37
Nup88-202ENSMUST00000108530 Il4rP16382 810 aa17.37■□□□□ 0.37
Nup88-202ENSMUST00000108530 Gnat2P50149 354 aa17.37■□□□□ 0.37
Nup88-202ENSMUST00000108530 TrhQ62361 256 aa17.37■□□□□ 0.37
Nup88-202ENSMUST00000108530 Med23Q80YQ2 1367 aa17.37■□□□□ 0.37
Nup88-202ENSMUST00000108530 Adgra3Q7TT36 1310 aa17.37■□□□□ 0.37
Nup88-202ENSMUST00000108530 Slc44a4Q91VA1 707 aa17.37■□□□□ 0.37
Nup88-202ENSMUST00000108530 Mrpl44Q9CY73 333 aaKnown RBP17.37■□□□□ 0.37
Nup88-202ENSMUST00000108530 Gdf11Q9Z1W4 405 aa17.37■□□□□ 0.37
Nup88-202ENSMUST00000108530 Ltn1Q6A009 1767 aa17.36■□□□□ 0.37
Nup88-202ENSMUST00000108530 Cyp26a1O55127 497 aa17.36■□□□□ 0.37
Nup88-202ENSMUST00000108530 Pde11aP0C1Q2 933 aa17.36■□□□□ 0.37
Nup88-202ENSMUST00000108530 CerkQ8K4Q7 531 aa17.36■□□□□ 0.37
Nup88-202ENSMUST00000108530 Mrpl12Q9DB15 201 aaKnown RBP17.36■□□□□ 0.37
Nup88-202ENSMUST00000108530 Arfgef1G3X9K3 1846 aaKnown RBP17.36■□□□□ 0.37
Nup88-202ENSMUST00000108530 Rbbp6P97868 1790 aaKnown RBP17.36■□□□□ 0.37
Nup88-202ENSMUST00000108530 FAM186AQ9D9R9 1790 aa17.36■□□□□ 0.37
Nup88-202ENSMUST00000108530 Syce3B5KM66 88 aa17.36■□□□□ 0.37
Nup88-202ENSMUST00000108530 Dhx16G3X8X0 1044 aaKnown RBP17.36■□□□□ 0.37
Nup88-202ENSMUST00000108530 9230110C19RikQ8CC70 267 aa17.36■□□□□ 0.37
Nup88-202ENSMUST00000108530 Col4a5Q63ZW6 1691 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 Cd3dP04235 173 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 Fbln2P37889 1221 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 MlphQ91V27 590 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 Ccdc39Q9D5Y1 937 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 Prdm11A2AGX3 565 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 AU015836B2RUM3 263 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 Fhdc1Q3ULZ2 1149 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 ErmnQ5EBJ4 281 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 Tpcn2Q8BWC0 731 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 Zfp317Q8C0Q5 607 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 Ccdc178Q8CDV0 866 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 Suclg2Q9Z2I8 433 aa17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 Togaram1Q6A070 1776 aaKnown RBP17.35■□□□□ 0.37
Nup88-202ENSMUST00000108530 Me1P06801 572 aa17.34■□□□□ 0.37
Nup88-202ENSMUST00000108530 Q3TYL0 343 aa17.34■□□□□ 0.37
Nup88-202ENSMUST00000108530 Mum1l1Q4VA55 681 aa17.34■□□□□ 0.37
Nup88-202ENSMUST00000108530 Nap1l3Q794H2 544 aa17.34■□□□□ 0.37
Nup88-202ENSMUST00000108530 U2af1l4Q8BGJ9 220 aa17.34■□□□□ 0.37
Nup88-202ENSMUST00000108530 Znf609Q8BZ47 1413 aa17.34■□□□□ 0.37
Nup88-202ENSMUST00000108530 Trim59Q922Y2 403 aa17.34■□□□□ 0.37
Nup88-202ENSMUST00000108530 Lnx1O70263 728 aa17.33■□□□□ 0.37
Nup88-202ENSMUST00000108530 Wdhd1P59328 1117 aa17.33■□□□□ 0.37
Nup88-202ENSMUST00000108530 Esyt1Q3U7R1 1092 aaKnown RBP17.33■□□□□ 0.37
Nup88-202ENSMUST00000108530 Spg7Q3ULF4 781 aa17.33■□□□□ 0.37
Nup88-202ENSMUST00000108530 Glg1Q61543 1175 aaKnown RBP17.33■□□□□ 0.37
Nup88-202ENSMUST00000108530 Olfr118Q7TRJ6 321 aa17.33■□□□□ 0.37
Nup88-202ENSMUST00000108530 Samm50Q8BGH2 469 aa17.33■□□□□ 0.37
Nup88-202ENSMUST00000108530 Q8C6G1 249 aa17.33■□□□□ 0.37
Retrieved 100 of 22,080 RNA–protein pairs in 28.1 ms