RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 CELA2BP08218 269 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-209ENST00000635750 EFNB2P52799 333 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 ST3GAL2Q16842 350 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 OR2K2Q8NGT1 345 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 SRSF12Q8WXF0 261 aaKnown RBP4.8□□□□□ -1.64
SCN1A-209ENST00000635750 DMRTA2Q96SC8 542 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 VCX2Q9H322 139 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 RREB1Q92766 1687 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 NKX2-6A6NCS4 301 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 CYB5R3P00387 301 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-209ENST00000635750 SNRPEP62304 92 aaKnown RBP4.8□□□□□ -1.64
SCN1A-209ENST00000635750 SPNS2Q8IVW8 549 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 H1FOOQ8IZA3 346 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-209ENST00000635750 FAM169BQ8N8A8 192 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 TXNDC17Q9BRA2 123 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 RPP25Q9BUL9 199 aaKnown RBP4.8□□□□□ -1.64
SCN1A-209ENST00000635750 SERGEFQ9UGK8 458 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 HSF4Q9ULV5 492 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 STRCQ7RTU9 1775 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 PLXNA1Q9UIW2 1896 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 EIF3GO75821 320 aaKnown RBP eCLIP4.8□□□□□ -1.64
SCN1A-209ENST00000635750 ITGBL1O95965 494 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-209ENST00000635750 FOLR2P14207 255 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 RND2P52198 227 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 PKIAP61925 76 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 OR9G1Q8NH87 305 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 C8orf46Q8TAG6 207 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 RCC2Q9P258 522 aaKnown RBP4.8□□□□□ -1.64
SCN1A-209ENST00000635750 A0A1B0GVG6 124 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 HLA-DQA1P01909 254 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 RBM11P57052 281 aaKnown RBP4.8□□□□□ -1.64
SCN1A-209ENST00000635750 SPATA45Q537H7 98 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 UCN2Q96RP3 112 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 G6PC2Q9NQR9 355 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 ST6GALNAC2Q9UJ37 374 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 NEU3Q9UQ49 428 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 TRGV4A0A0C4DH28 118 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 TGFAP01135 160 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 IGLV3-25P01717 112 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 CD8AP01732 235 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 SMIM13P0DJ93 91 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 SPINK2P20155 84 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 HOXA5P20719 270 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 PQLC2Q6ZP29 291 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 TMEM86BQ8N661 226 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 SMRP1Q8NCR6 262 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 OR51M1Q9H341 326 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 BCORQ6W2J9 1755 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 FOXI3A8MTJ6 420 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-209ENST00000635750 IL6RP08887 468 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-209ENST00000635750 ZNF415Q09FC8 603 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 Q6ZNX1 250 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 FAM89BQ8N5H3 189 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 LRTM2Q8N967 370 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 C17orf47Q8NEP4 570 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 OR13A1Q8NGR1 328 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 ZPLD1Q8TCW7 415 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 PRSS22Q9GZN4 317 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 R3HDMLQ9H3Y0 253 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 RBKSQ9H477 322 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 TMEM160Q9NX00 188 aa4.8□□□□□ -1.64
SCN1A-209ENST00000635750 COL9A1P20849 921 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 RNASE4P34096 147 aaKnown RBP4.79□□□□□ -1.64
SCN1A-209ENST00000635750 FGF12P61328 243 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 ACSF3Q4G176 576 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-209ENST00000635750 EDA2RQ9HAV5 297 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 RPRMQ9NS64 109 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 TMEM106BQ9NUM4 274 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 ZNF646O15015 1829 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-209ENST00000635750 F8WEM9 126 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 H0Y980 276 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 HLA-DRB1P01911 266 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 TYMSP04818 313 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 CD33P20138 364 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 CKS1BP61024 79 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 ERVK11-1P61568 191 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 LCN2P80188 198 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 NSUN5P1Q3KNT7 163 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 S100A7L2Q5SY68 101 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 SMDT1Q9H4I9 107 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 C7orf69Q9H7B7 122 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 IGHV1-45A0A0A0MS14 117 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 A0A0U1RQV5 110 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 REG1AP05451 166 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 FGF9P31371 208 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-209ENST00000635750 LEPP41159 167 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 RPS11P62280 158 aaKnown RBP eCLIP4.79□□□□□ -1.64
SCN1A-209ENST00000635750 RAE1P78406 368 aaKnown RBP4.79□□□□□ -1.64
SCN1A-209ENST00000635750 AWAT1Q58HT5 328 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 PNKDQ8N490 385 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 HMGCLL1Q8TB92 370 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 TMEM167AQ8TBQ9 72 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 PSMG3Q9BT73 122 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-209ENST00000635750 MRPL32Q9BYC8 188 aaKnown RBP4.79□□□□□ -1.64
SCN1A-209ENST00000635750 CST9LQ9H4G1 147 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 F11RQ9Y624 299 aaKnown RBP4.79□□□□□ -1.64
SCN1A-209ENST00000635750 MRPS18BQ9Y676 258 aaKnown RBP4.79□□□□□ -1.64
SCN1A-209ENST00000635750 PATE3B3GLJ2 98 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 CTDSPLO15194 276 aa4.79□□□□□ -1.64
SCN1A-209ENST00000635750 NOVP48745 357 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms