RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SHOXO15266 292 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 OR2C1O95371 312 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 IFNA4P05014 189 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 UBBP0CG47 229 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 RPS11P62280 158 aaKnown RBP eCLIP7.52□□□□□ -1.21
TRIM28-210ENST00000597618 RPS27AP62979 156 aaKnown RBP7.52□□□□□ -1.21
TRIM28-210ENST00000597618 TAGLNQ01995 201 aaKnown RBP7.52□□□□□ -1.21
TRIM28-210ENST00000597618 TNXAQ16473 311 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 PRSS8Q16651 343 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 RTL8BQ17RB0 113 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 ZIK1Q3SY52 487 aaPredicted RBP7.52□□□□□ -1.21
TRIM28-210ENST00000597618 VMA21Q3ZAQ7 101 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 FAM106AQ4KMX7 169 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 TMEM177Q53S58 311 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 OR2G6Q5TZ20 316 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 OR4A47Q6IF82 309 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 BTNL8Q6UX41 500 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 STPG3Q8N7X2 389 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 RHOXF1Q8NHV9 184 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 FBLIM1Q8WUP2 373 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 SLC7A6OSQ96CW6 309 aaPredicted RBP7.52□□□□□ -1.21
TRIM28-210ENST00000597618 SLC29A1Q99808 456 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 SPIN2AQ99865 258 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 SPIN2BQ9BPZ2 258 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 TMEM59Q9BXS4 323 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 FGF20Q9NP95 211 aaPredicted RBP7.52□□□□□ -1.21
TRIM28-210ENST00000597618 BABAM2Q9NXR7 383 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 DMRT1Q9Y5R6 373 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 SELENOKQ9Y6D0 94 aa7.52□□□□□ -1.21
TRIM28-210ENST00000597618 A0A1W2PPK0 400 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 ZNF320A2RRD8 509 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 ATP8B1O43520 1251 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 CREBL2O60519 120 aaPredicted RBP7.51□□□□□ -1.21
TRIM28-210ENST00000597618 OR2J3O76001 311 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 ACTL6BO94805 426 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 ARL3P36405 182 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 ETV1P50549 477 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 UBE2KP61086 200 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 MRGPRG-AS1Q2M3A8 158 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 C1orf146Q5VVC0 180 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 RBPMS2Q6ZRY4 209 aaKnown RBP7.51□□□□□ -1.21
TRIM28-210ENST00000597618 SLC25A42Q86VD7 318 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 SLC38A6Q8IZM9 456 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 TTC9CQ8N5M4 171 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 TEX45Q8NA69 505 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 UXS1Q8NBZ7 420 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 ACOT12Q8WYK0 555 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 MARC2Q969Z3 335 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 PGLYRP3Q96LB9 341 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 PLEKHJ1Q9NW61 149 aa7.51□□□□□ -1.21
TRIM28-210ENST00000597618 A0A1B0GVY2 172 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 SRRM4A7MD48 611 aaKnown RBP7.5□□□□□ -1.21
TRIM28-210ENST00000597618 LALBAP00709 142 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 RRASP10301 218 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 MYL12AP19105 171 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 DCKP27707 260 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 HTR2CP28335 458 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 RBMS2Q15434 407 aaKnown RBP7.5□□□□□ -1.21
TRIM28-210ENST00000597618 MED22Q15528 200 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 OR2C3Q8N628 320 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 C11orf45Q8TAV5 145 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 C2CD4CQ8TF44 421 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 DERL3Q96Q80 235 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 SPAG8Q99932 426 aaPredicted RBP7.5□□□□□ -1.21
TRIM28-210ENST00000597618 TM2D1Q9BX74 207 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 C12orf4Q9NQ89 552 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 RDH8Q9NYR8 311 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 FBXL17Q9UF56 701 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 ZNF257Q9Y2Q1 563 aa7.5□□□□□ -1.21
TRIM28-210ENST00000597618 PKD1P98161 4303 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 MUC4Q99102 2169 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 IRGMA1A4Y4 181 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 SCTP09683 121 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 CTRB1P17538 263 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 SERPINB10P48595 397 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 NANOS2P60321 138 aaKnown RBP7.49□□□□□ -1.21
TRIM28-210ENST00000597618 TPBGQ13641 420 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 CTRB2Q6GPI1 263 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 OR10K2Q6IF99 312 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 IDO2Q6ZQW0 420 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 ZFP41Q8N8Y5 198 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 APH1BQ8WW43 257 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 GGHQ92820 318 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 CCDC140Q96MF4 163 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 NICN1Q9BSH3 213 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 HDHD3Q9BSH5 251 aaPredicted RBP7.49□□□□□ -1.21
TRIM28-210ENST00000597618 OR2D2Q9H210 308 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 C11orf68Q9H3H3 251 aaKnown RBP7.49□□□□□ -1.21
TRIM28-210ENST00000597618 ZNF430Q9H8G1 570 aaPredicted RBP7.49□□□□□ -1.21
TRIM28-210ENST00000597618 Q9N2K0 584 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 SDHAF2Q9NX18 166 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 AK3Q9UIJ7 227 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 FBXL7Q9UJT9 491 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 HSPG2P98160 4391 aa7.49□□□□□ -1.21
TRIM28-210ENST00000597618 IGKV1-6A0A0C4DH72 117 aa7.48□□□□□ -1.21
TRIM28-210ENST00000597618 CRYZL1O95825 349 aa7.48□□□□□ -1.21
TRIM28-210ENST00000597618 GSTT2P0CG29 244 aa7.48□□□□□ -1.21
TRIM28-210ENST00000597618 GSTT2BP0CG30 244 aa7.48□□□□□ -1.21
TRIM28-210ENST00000597618 C8orf88P0DMB2 117 aa7.48□□□□□ -1.21
TRIM28-210ENST00000597618 SRMP19623 302 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms