RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 FAM90A14PP0C7W9 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A24PP0C7X0 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 OPN1MW2P0DN77 364 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 OPN1MW3P0DN78 364 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 ARR3P36575 388 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 OR8G5Q8NG78 346 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM173AQ9BQD7 235 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 CDH20Q9HBT6 801 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 NEURL1O76050 574 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 AMBPP02760 352 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 CLDN18P56856 261 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 PNRC1Q12796 327 aaPredicted RBP12.87□□□□□ -0.35
UPF1-204ENST00000596842 Q6ZN92 141 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 ZNF703Q9H7S9 590 aaPredicted RBP12.87□□□□□ -0.35
UPF1-204ENST00000596842 LRP5LA4QPB2 252 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 DVL1O14640 695 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 HPRT1P00492 218 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 CEACAM8P31997 349 aaPredicted RBP12.87□□□□□ -0.35
UPF1-204ENST00000596842 CD81P60033 236 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 ERVFC1-1P60608 527 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 ZFP36L1Q07352 338 aaKnown RBP12.87□□□□□ -0.35
UPF1-204ENST00000596842 COL5A1-AS1Q5SY13 56 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 ATP1A1-AS1Q5TC04 95 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 OR10P1Q8NGE3 313 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 OR1P1Q8NH06 330 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 NAT8Q9UHE5 227 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 TRAV38-1A0A0B4J264 116 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 TDGF1P3P51864 188 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 RPL30P62888 115 aaKnown RBP12.87□□□□□ -0.35
UPF1-204ENST00000596842 JOSD1Q15040 202 aaPredicted RBP12.87□□□□□ -0.35
UPF1-204ENST00000596842 KRTAP27-1Q3LI81 207 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 CNEP1R1Q8N9A8 125 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 WDYHV1Q96HA8 205 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 RTL8AQ9BWD3 113 aa12.87□□□□□ -0.35
UPF1-204ENST00000596842 B4DEV8 164 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 CDC34P49427 236 aaPredicted RBP12.86□□□□□ -0.35
UPF1-204ENST00000596842 SSPNQ14714 243 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 TEX38Q6PEX7 206 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 Q8NFD4 153 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 CFAP47Q6ZTR5 3102 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 FABP6P51161 128 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 HNRNPA3P51991 378 aaKnown RBP12.86□□□□□ -0.35
UPF1-204ENST00000596842 UBE2NP61088 152 aaKnown RBP12.86□□□□□ -0.35
UPF1-204ENST00000596842 DCTN5Q9BTE1 182 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 OR51I2Q9H344 312 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 A0A1B0GUS0 222 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 GZMHP20718 246 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 FAM78BQ5VT40 261 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 H2BFWTQ7Z2G1 175 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 HINT2Q9BX68 163 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 DCHS1Q96JQ0 3298 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 PLCE1Q9P212 2302 aa12.86□□□□□ -0.35
UPF1-204ENST00000596842 OR5B21A6NL26 309 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 C17orf98A8MV24 154 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 J3QT63 122 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 SH2D1BO14796 132 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 AGFG2O95081 481 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 NTF3P20783 257 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 RIPPLY3P57055 190 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 RPL23P62829 140 aaKnown RBP12.85□□□□□ -0.35
UPF1-204ENST00000596842 VKORC1L1Q8N0U8 176 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 ABI3Q9P2A4 366 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 PSG11Q9UQ72 335 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 MPC1Q9Y5U8 109 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 ABCA1O95477 2261 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 NTN3O00634 580 aaPredicted RBP12.85□□□□□ -0.35
UPF1-204ENST00000596842 PSPNO60542 156 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 CER1O95813 267 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 IGLV2-14P01704 120 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 SSTR5P35346 364 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 GALMQ96C23 342 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 ARFGEF3Q5TH69 2177 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 ODAMA1E959 279 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 MAS1LP35410 378 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 SERF2P84101 59 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 MMDQ15546 238 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 PRAMEF6Q5VXH4 476 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 WDR86Q86TI4 376 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 SAXO1Q8IYX7 474 aa12.85□□□□□ -0.35
UPF1-204ENST00000596842 PINX1Q96BK5 328 aaKnown RBP12.85□□□□□ -0.35
UPF1-204ENST00000596842 SPINK4O60575 86 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 COL8A2P25067 703 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 SLC25A40Q8TBP6 338 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 NAGKQ9UJ70 344 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 PCNX1Q96RV3 2341 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 M0QZ24 198 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 GYPAP02724 150 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 MPLP40238 635 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 MEOX1P50221 254 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 MSMO1Q15800 293 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 TBC1D28Q2M2D7 210 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 PPP1CBP62140 327 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 ATOH7Q8N100 152 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 ALKBH7Q9BT30 221 aaPredicted RBP12.84□□□□□ -0.35
UPF1-204ENST00000596842 DERL1Q9BUN8 251 aa12.84□□□□□ -0.35
UPF1-204ENST00000596842 A0A1W2PPV4 95 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 C11orf94C9JXX5 98 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 M0QZK8 103 aa12.83□□□□□ -0.36
UPF1-204ENST00000596842 GGCTO75223 188 aaKnown RBP12.83□□□□□ -0.36
UPF1-204ENST00000596842 HAND1O96004 215 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms