RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 OR2B11Q5JQS5 317 aa12.87□□□□□ -0.35
CHMP1A-209ENST00000550872 LPCAT3Q6P1A2 487 aa12.87□□□□□ -0.35
CHMP1A-209ENST00000550872 FAM71E2Q8N5Q1 922 aa12.87□□□□□ -0.35
CHMP1A-209ENST00000550872 ZNF747Q9BV97 191 aa12.87□□□□□ -0.35
CHMP1A-209ENST00000550872 ANKRD20A5PA0PJZ0 165 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 DISC1C4P0D8 188 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 SHOXO15266 292 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 NDUFA3O95167 84 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 CRYZL1O95825 349 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 VSIG10L2P0DP72 767 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 LGALS7P47929 136 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 PLGLAQ15195 96 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 PSG5Q15238 335 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 C5orf64Q2M2E5 130 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 SCGB2B2Q4G0G5 96 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 TMEM177Q53S58 311 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 LIN54Q6MZP7 749 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 SLC35E3Q7Z769 313 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 KLHDC1Q8N7A1 406 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 WFDC12Q8WWY7 111 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 FBXL15Q9H469 300 aa12.86□□□□□ -0.35
CHMP1A-209ENST00000550872 GPR31O00270 319 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 IGHG2P01859 326 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 ZNF735P0CB33 412 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 PGAM2P15259 253 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 UCP3P55916 312 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 CATR1Q13166 79 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 AADACL3Q5VUY0 350 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 FAAP20Q6NZ36 180 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 CMTM1Q8IZ96 169 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 OR4C16Q8NGL9 310 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 TERB2Q8NHR7 220 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 HARBI1Q96MB7 349 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 SRRQ9GZT4 340 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 METTL1Q9UBP6 276 aaKnown RBP12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 PLXNB1O43157 2135 aa12.85□□□□□ -0.35
CHMP1A-209ENST00000550872 LINC01548A6NM66 108 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 SLC25A17O43808 307 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 PGLYRP1O75594 196 aaPredicted RBP12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 SPDEFO95238 335 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 S100GP29377 79 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 KIR2DS2P43631 304 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 KRTAP10-3P60369 221 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 SRSF4Q08170 494 aaKnown RBP12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 PHLDA2Q53GA4 152 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 SHISA2Q6UWI4 295 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 CENPVQ7Z7K6 275 aaPredicted RBP12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 LHFPL1Q86WI0 220 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 SLC38A6Q8IZM9 456 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 TOMM5Q8N4H5 51 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 GDPD1Q8N9F7 314 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 OR51H1Q8NH63 302 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 OSR1Q8TAX0 266 aaPredicted RBP12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 TRIM63Q969Q1 353 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 CLCC1Q96S66 551 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 RSRP1Q9BUV0 290 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 WNT10AQ9GZT5 417 aa12.84□□□□□ -0.35
CHMP1A-209ENST00000550872 SRRM4A7MD48 611 aaKnown RBP12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 KCNAB3O43448 404 aa12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 IGLV2-23P01705 113 aa12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 HLA-DRB1P01911 266 aa12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 PPP5CP53041 499 aa12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 AP3S2P59780 193 aa12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 ZNF45Q02386 682 aa12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 FOXRED2Q8IWF2 684 aa12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 SPAG16Q8N0X2 631 aa12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 POC5Q8NA72 575 aa12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 OR4S2Q8NH73 311 aa12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 HSPB9Q9BQS6 159 aa12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 LINC00527Q9UJ94 153 aa12.83□□□□□ -0.36
CHMP1A-209ENST00000550872 AP4M1O00189 453 aa12.82□□□□□ -0.36
CHMP1A-209ENST00000550872 FCN1O00602 326 aa12.82□□□□□ -0.36
CHMP1A-209ENST00000550872 RLN1P04808 185 aa12.82□□□□□ -0.36
CHMP1A-209ENST00000550872 INPP1P49441 399 aa12.82□□□□□ -0.36
CHMP1A-209ENST00000550872 BRWD1-AS2P59051 145 aa12.82□□□□□ -0.36
CHMP1A-209ENST00000550872 KLF9Q13886 244 aaPredicted RBP12.82□□□□□ -0.36
CHMP1A-209ENST00000550872 VMA21Q3ZAQ7 101 aa12.82□□□□□ -0.36
CHMP1A-209ENST00000550872 OR51S1Q8NGJ8 323 aa12.82□□□□□ -0.36
CHMP1A-209ENST00000550872 ZFAND1Q8TCF1 268 aa12.82□□□□□ -0.36
CHMP1A-209ENST00000550872 NOL4LQ96MY1 436 aaPredicted RBP12.82□□□□□ -0.36
CHMP1A-209ENST00000550872 MCUBQ9NWR8 336 aa12.82□□□□□ -0.36
CHMP1A-209ENST00000550872 PTTG2Q9NZH5 202 aa12.82□□□□□ -0.36
CHMP1A-209ENST00000550872 IGHV7-81A0A0B4J1V7 117 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 RBFOX2O43251 390 aaKnown RBP eCLIP12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 FAUP35544 74 aaKnown RBP12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 CX3CL1P78423 397 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 TRIQKQ629K1 86 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 ZNF57Q68EA5 555 aaPredicted RBP12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 LINC00299Q6ZSB3 139 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 C11orf44Q8N8P7 122 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 MARCH1Q8TCQ1 289 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 CD300LFQ8TDQ1 290 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 CHPT1Q8WUD6 406 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 PRRT1Q99946 306 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 OR51J1Q9H342 316 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 HRASLSQ9HDD0 168 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 TPSG1Q9NRR2 321 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 SCP2D1Q9UJQ7 156 aa12.81□□□□□ -0.36
CHMP1A-209ENST00000550872 RAMP3O60896 148 aa12.8□□□□□ -0.36
CHMP1A-209ENST00000550872 HRASP01112 189 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms