RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 DIRAS3O95661 229 aa15.15■□□□□ 0.02
COL9A3-210ENST00000472880 IGLV1-51P01701 117 aa15.15■□□□□ 0.02
COL9A3-210ENST00000472880 GSTT2P0CG29 244 aa15.15■□□□□ 0.02
COL9A3-210ENST00000472880 GSTT2BP0CG30 244 aa15.15■□□□□ 0.02
COL9A3-210ENST00000472880 GALP22466 123 aa15.15■□□□□ 0.02
COL9A3-210ENST00000472880 OR10R2Q8NGX6 335 aa15.15■□□□□ 0.02
COL9A3-210ENST00000472880 MAFIPQ8WZ33 124 aa15.15■□□□□ 0.02
COL9A3-210ENST00000472880 GINS4Q9BRT9 223 aa15.15■□□□□ 0.02
COL9A3-210ENST00000472880 TRAV1-2A0A0B4J238 106 aa15.14■□□□□ 0.01
COL9A3-210ENST00000472880 SHISA3A0PJX4 238 aa15.14■□□□□ 0.01
COL9A3-210ENST00000472880 CRYGBP07316 175 aa15.14■□□□□ 0.01
COL9A3-210ENST00000472880 RRASP10301 218 aa15.14■□□□□ 0.01
COL9A3-210ENST00000472880 GNB3P16520 340 aa15.14■□□□□ 0.01
COL9A3-210ENST00000472880 MYL9P24844 172 aa15.14■□□□□ 0.01
COL9A3-210ENST00000472880 KCTD21Q4G0X4 260 aa15.14■□□□□ 0.01
COL9A3-210ENST00000472880 CASC10Q5T4H9 136 aa15.14■□□□□ 0.01
COL9A3-210ENST00000472880 SGPP2Q8IWX5 399 aa15.14■□□□□ 0.01
COL9A3-210ENST00000472880 BVESQ8NE79 360 aa15.14■□□□□ 0.01
COL9A3-210ENST00000472880 PHB2Q99623 299 aa15.14■□□□□ 0.01
COL9A3-210ENST00000472880 COA4Q9NYJ1 87 aa15.14■□□□□ 0.01
COL9A3-210ENST00000472880 MFNGO00587 321 aa15.13■□□□□ 0.01
COL9A3-210ENST00000472880 IGHV4-30-4P0DP06 118 aa15.13■□□□□ 0.01
COL9A3-210ENST00000472880 HIST1H1DP16402 221 aaKnown RBP15.13■□□□□ 0.01
COL9A3-210ENST00000472880 AADACP22760 399 aa15.13■□□□□ 0.01
COL9A3-210ENST00000472880 OR10A3P58181 314 aa15.13■□□□□ 0.01
COL9A3-210ENST00000472880 TMEM177Q53S58 311 aa15.13■□□□□ 0.01
COL9A3-210ENST00000472880 C22orf42Q6IC83 251 aa15.13■□□□□ 0.01
COL9A3-210ENST00000472880 C5orf30Q96GV9 206 aa15.13■□□□□ 0.01
COL9A3-210ENST00000472880 TINAGL1Q9GZM7 467 aaPredicted RBP15.13■□□□□ 0.01
COL9A3-210ENST00000472880 ZNF230Q9UIE0 474 aaPredicted RBP15.13■□□□□ 0.01
COL9A3-210ENST00000472880 IFITM5A6NNB3 132 aa15.12■□□□□ 0.01
COL9A3-210ENST00000472880 RAB6AP20340 208 aa15.12■□□□□ 0.01
COL9A3-210ENST00000472880 TALDO1P37837 337 aa15.12■□□□□ 0.01
COL9A3-210ENST00000472880 DEFA5Q01523 94 aa15.12■□□□□ 0.01
COL9A3-210ENST00000472880 ARFRP1Q13795 201 aa15.12■□□□□ 0.01
COL9A3-210ENST00000472880 VMA21Q3ZAQ7 101 aa15.12■□□□□ 0.01
COL9A3-210ENST00000472880 OR9G4Q8NGQ1 327 aa15.12■□□□□ 0.01
COL9A3-210ENST00000472880 ADTRPQ96IZ2 230 aa15.12■□□□□ 0.01
COL9A3-210ENST00000472880 CENPOQ9BU64 300 aa15.12■□□□□ 0.01
COL9A3-210ENST00000472880 PALMDQ9NP74 551 aa15.12■□□□□ 0.01
COL9A3-210ENST00000472880 METTL21EPA6NDL7 271 aa15.11■□□□□ 0.01
COL9A3-210ENST00000472880 RAB27BO00194 218 aa15.11■□□□□ 0.01
COL9A3-210ENST00000472880 BRI3O95415 125 aa15.11■□□□□ 0.01
COL9A3-210ENST00000472880 APELAP0DMC3 54 aa15.11■□□□□ 0.01
COL9A3-210ENST00000472880 SYNJ2BPP57105 145 aa15.11■□□□□ 0.01
COL9A3-210ENST00000472880 KLF5Q13887 457 aaPredicted RBP15.11■□□□□ 0.01
COL9A3-210ENST00000472880 USMG5Q96IX5 58 aa15.11■□□□□ 0.01
COL9A3-210ENST00000472880 PEF1Q9UBV8 284 aaKnown RBP15.11■□□□□ 0.01
COL9A3-210ENST00000472880 SRRM4A7MD48 611 aaKnown RBP15.1■□□□□ 0.01
COL9A3-210ENST00000472880 H0Y980 276 aa15.1■□□□□ 0.01
COL9A3-210ENST00000472880 MPPED1O15442 326 aa15.1■□□□□ 0.01
COL9A3-210ENST00000472880 CRYZL1O95825 349 aa15.1■□□□□ 0.01
COL9A3-210ENST00000472880 LYL1P12980 280 aa15.1■□□□□ 0.01
COL9A3-210ENST00000472880 RAB3BP20337 219 aa15.1■□□□□ 0.01
COL9A3-210ENST00000472880 FGF9P31371 208 aaPredicted RBP15.1■□□□□ 0.01
COL9A3-210ENST00000472880 UBE2KP61086 200 aa15.1■□□□□ 0.01
COL9A3-210ENST00000472880 TNXAQ16473 311 aa15.1■□□□□ 0.01
COL9A3-210ENST00000472880 ZNF343Q6P1L6 599 aa15.1■□□□□ 0.01
COL9A3-210ENST00000472880 Q8N1Y9 231 aa15.1■□□□□ 0.01
COL9A3-210ENST00000472880 TEX45Q8NA69 505 aa15.1■□□□□ 0.01
COL9A3-210ENST00000472880 TM2D3Q9BRN9 247 aa15.1■□□□□ 0.01
COL9A3-210ENST00000472880 TXNL4BQ9NX01 149 aaKnown RBP15.1■□□□□ 0.01
COL9A3-210ENST00000472880 DUTP33316 252 aaKnown RBP15.09■□□□□ 0.01
COL9A3-210ENST00000472880 DYRK1AQ13627 763 aa15.09■□□□□ 0.01
COL9A3-210ENST00000472880 NEDD8Q15843 81 aa15.09■□□□□ 0.01
COL9A3-210ENST00000472880 TATDN3Q17R31 274 aa15.09■□□□□ 0.01
COL9A3-210ENST00000472880 RPEL1Q2QD12 228 aa15.09■□□□□ 0.01
COL9A3-210ENST00000472880 IDO2Q6ZQW0 420 aa15.09■□□□□ 0.01
COL9A3-210ENST00000472880 NR2C2APQ86WQ0 139 aa15.09■□□□□ 0.01
COL9A3-210ENST00000472880 H1FOOQ8IZA3 346 aaPredicted RBP15.09■□□□□ 0.01
COL9A3-210ENST00000472880 SRSF12Q8WXF0 261 aaKnown RBP15.09■□□□□ 0.01
COL9A3-210ENST00000472880 ACOT12Q8WYK0 555 aa15.09■□□□□ 0.01
COL9A3-210ENST00000472880 DDB2Q92466 427 aa15.09■□□□□ 0.01
COL9A3-210ENST00000472880 CITED4Q96RK1 184 aa15.09■□□□□ 0.01
COL9A3-210ENST00000472880 A0A0B4J203 849 aa15.08■□□□□ 0
COL9A3-210ENST00000472880 MSGN1A6NI15 193 aa15.08■□□□□ 0
COL9A3-210ENST00000472880 A8MZ25 164 aa15.08■□□□□ 0
COL9A3-210ENST00000472880 CREBL2O60519 120 aaPredicted RBP15.08■□□□□ 0
COL9A3-210ENST00000472880 TRBV12-3P01733 135 aa15.08■□□□□ 0
COL9A3-210ENST00000472880 OR9G9P0C7N8 305 aa15.08■□□□□ 0
COL9A3-210ENST00000472880 ARL6IP1Q15041 203 aa15.08■□□□□ 0
COL9A3-210ENST00000472880 PRSS8Q16651 343 aa15.08■□□□□ 0
COL9A3-210ENST00000472880 Q6ZS49 121 aa15.08■□□□□ 0
COL9A3-210ENST00000472880 ADAD2Q8NCV1 583 aaKnown RBP15.08■□□□□ 0
COL9A3-210ENST00000472880 OSR1Q8TAX0 266 aaPredicted RBP15.08■□□□□ 0
COL9A3-210ENST00000472880 ATG5Q9H1Y0 275 aa15.08■□□□□ 0
COL9A3-210ENST00000472880 OR51E2Q9H255 320 aa15.08■□□□□ 0
COL9A3-210ENST00000472880 C19orf73Q9NVV2 129 aa15.08■□□□□ 0
COL9A3-210ENST00000472880 SSR3Q9UNL2 185 aa15.08■□□□□ 0
COL9A3-210ENST00000472880 LINC00473A8K010 186 aa15.07■□□□□ 0
COL9A3-210ENST00000472880 DTYMKP23919 212 aa15.07■□□□□ 0
COL9A3-210ENST00000472880 MRGPRG-AS1Q2M3A8 158 aa15.07■□□□□ 0
COL9A3-210ENST00000472880 LCN12Q6JVE5 192 aa15.07■□□□□ 0
COL9A3-210ENST00000472880 IL34Q6ZMJ4 242 aa15.07■□□□□ 0
COL9A3-210ENST00000472880 GTSCR1Q86UQ5 136 aa15.07■□□□□ 0
COL9A3-210ENST00000472880 ADAM30Q9UKF2 790 aa15.07■□□□□ 0
COL9A3-210ENST00000472880 IGKV1D-8A0A087WSZ0 117 aa15.06■□□□□ 0
COL9A3-210ENST00000472880 SMIM30A4D0T7 59 aa15.06■□□□□ 0
COL9A3-210ENST00000472880 ACTL6BO94805 426 aa15.06■□□□□ 0
COL9A3-210ENST00000472880 OR2A4O95047 310 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms