RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 ANAPC10Q9UM13 185 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 FBN1P35555 2871 aaKnown RBP9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 FABP12A6NFH5 140 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 NBR2O15453 112 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 SLC22A5O76082 557 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 TPPPO94811 219 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 CNTFRP26992 372 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 RPS16P62249 146 aaKnown RBP9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 DGCR2P98153 550 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 DYRK1AQ13627 763 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 PLGLAQ15195 96 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 RTL8BQ17RB0 113 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 OVCH2Q7RTZ1 564 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 TMEM17Q86X19 198 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 PDPNQ86YL7 162 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 C11orf44Q8N8P7 122 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 BVESQ8NE79 360 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 OR6F1Q8NGZ6 308 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 GIMAP1Q8WWP7 306 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 FLYWCH2Q96CP2 140 aaKnown RBP9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 C5orf30Q96GV9 206 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 ADTRPQ96IZ2 230 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 CCL28Q9NRJ3 127 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 SERTAD4Q9NUC0 356 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 LIN7CQ9NUP9 197 aaKnown RBP9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 TAS2R8Q9NYW2 309 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 RABL2AQ9UBK7 228 aaPredicted RBP9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 RABL2BQ9UNT1 228 aa9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 RBMX2Q9Y388 322 aaKnown RBP9.1□□□□□ -0.95
CCDC88C-212ENST00000556767 GABARAPH6UMI1 98 aa9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 M0QYG6 137 aa9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 IFNA6P05013 189 aa9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 DUTP33316 252 aaKnown RBP9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 KRTAP10-3P60369 221 aa9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 MRPS10P82664 201 aaKnown RBP9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 ACTBL2Q562R1 376 aa9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 OR2B11Q5JQS5 317 aa9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 KCTD9Q7L273 389 aa9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 SLC35E3Q7Z769 313 aa9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 CENPVQ7Z7K6 275 aaPredicted RBP9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 PLSCR3Q9NRY6 295 aa9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 MTFP1Q9UDX5 166 aa9.09□□□□□ -0.95
CCDC88C-212ENST00000556767 LINC00473A8K010 186 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 SHOXO15266 292 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 TNFSF12O43508 249 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 FCGR3BO75015 233 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 IGKV1-16P04430 117 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 RRASP10301 218 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 TAS2R19P59542 299 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 TAGLNQ01995 201 aaKnown RBP9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 RNASE10Q5GAN6 216 aaKnown RBP9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 FOXB2Q5VYV0 432 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 LIN54Q6MZP7 749 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 DHRS11Q6UWP2 260 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 FOXRED2Q8IWF2 684 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 TCTEX1D2Q8WW35 142 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 GPHA2Q96T91 129 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 TSNAXQ99598 290 aaKnown RBP9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 HSD17B10Q99714 261 aaKnown RBP9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 RNF5Q99942 180 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 TINAGL1Q9GZM7 467 aaPredicted RBP9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 FBXL15Q9H469 300 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 METTL1Q9UBP6 276 aaKnown RBP9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 ZNF107Q9UII5 783 aaPredicted RBP9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 LINC00527Q9UJ94 153 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 PRELID3BQ9Y3B1 194 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 A3GALT2U3KPV4 340 aa9.08□□□□□ -0.96
CCDC88C-212ENST00000556767 RRHO14718 337 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 CTDSPLO15194 276 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 KCNAB3O43448 404 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 RAB3DO95716 219 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 CRYZL1O95825 349 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 IGLV2-14P01704 120 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 CD3DP04234 171 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 RPL30P62888 115 aaKnown RBP9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 C5orf64Q2M2E5 130 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 PYDC2Q56P42 97 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 HIST2H2BDQ6DRA6 164 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 MFSD4AQ8N468 514 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 FAM71E2Q8N5Q1 922 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 TMEM229BQ8NBD8 167 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 ZBTB34Q8NCN2 500 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 NPBQ8NG41 125 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 ABHD5Q8WTS1 349 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 SMIM4Q8WVI0 70 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 BORCS5Q969J3 196 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 MOB3AQ96BX8 217 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 HARBI1Q96MB7 349 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 NOL4LQ96MY1 436 aaPredicted RBP9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 CLCC1Q96S66 551 aa9.07□□□□□ -0.96
CCDC88C-212ENST00000556767 LINC01548A6NM66 108 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 AP4M1O00189 453 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 SLC25A17O43808 307 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 FBXO24O75426 580 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 NDUFA3O95167 84 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 IGHG2P01859 326 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 CSF1P09603 554 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 SSBP1Q04837 148 aaKnown RBP9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 CATR1Q13166 79 aa9.06□□□□□ -0.96
CCDC88C-212ENST00000556767 PSG5Q15238 335 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms