RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 H1FOOQ8IZA3 346 aaPredicted RBP10.96□□□□□ -0.65
UPF1-205ENST00000598209 DRAXINQ8NBI3 349 aaPredicted RBP10.96□□□□□ -0.65
UPF1-205ENST00000598209 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.96□□□□□ -0.65
UPF1-205ENST00000598209 OR8U1Q8NH10 309 aa10.96□□□□□ -0.65
UPF1-205ENST00000598209 RITA1Q96K30 269 aa10.96□□□□□ -0.65
UPF1-205ENST00000598209 CITED2Q99967 270 aaPredicted RBP10.96□□□□□ -0.65
UPF1-205ENST00000598209 MMP27Q9H306 513 aa10.96□□□□□ -0.65
UPF1-205ENST00000598209 RBM7Q9Y580 266 aaKnown RBP10.96□□□□□ -0.65
UPF1-205ENST00000598209 LINC01548A6NM66 108 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 H7C2Y5 167 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 M0R1X1 148 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 CTXN2P0C2S0 81 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 PTHLHP12272 177 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 MC5RP33032 325 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 RORCP51449 518 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 NSUN5P1Q3KNT7 163 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 CNIH2Q6PI25 160 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 C10orf99Q6UWK7 81 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 NDUFA11Q86Y39 141 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 FOXRED2Q8IWF2 684 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 GVQW1Q8N7I0 195 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 ZNF383Q8NA42 475 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 OR5AN1Q8NGI8 311 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 NOL4LQ96MY1 436 aaPredicted RBP10.95□□□□□ -0.66
UPF1-205ENST00000598209 COMMD3Q9UBI1 195 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 ANXA10Q9UJ72 324 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 LINC00527Q9UJ94 153 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 GAB2Q9UQC2 676 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 WASHC3Q9Y3C0 194 aa10.95□□□□□ -0.66
UPF1-205ENST00000598209 PLXNB1O43157 2135 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 PSMB11A5LHX3 300 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 NBR2O15453 112 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 KCNAB3O43448 404 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 SOX6P35712 828 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 LINC00205P59089 165 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 CD83Q01151 205 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 TCTEX1D4Q5JR98 221 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 TMEM69Q5SWH9 247 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 BEST4Q8NFU0 473 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 NPBQ8NG41 125 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 OR4X2Q8NGF9 303 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 FAM110DQ8TAY7 271 aaPredicted RBP10.94□□□□□ -0.66
UPF1-205ENST00000598209 CHPT1Q8WUD6 406 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 ACOT12Q8WYK0 555 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 C5orf30Q96GV9 206 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 HSPB9Q9BQS6 159 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 SDHAF2Q9NX18 166 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 KIAA1456Q9P272 454 aa10.94□□□□□ -0.66
UPF1-205ENST00000598209 CMYA5Q8N3K9 4069 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 ADARB2-AS1A8MUL3 147 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 J3QRK9 145 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 AP4M1O00189 453 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 NDUFA3O95167 84 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 APOA2P02652 100 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 EIF4EP06730 217 aaKnown RBP10.93□□□□□ -0.66
UPF1-205ENST00000598209 FCER2P06734 321 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 NFYAP23511 347 aaPredicted RBP10.93□□□□□ -0.66
UPF1-205ENST00000598209 CBX5P45973 191 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 TAS2R20P59543 309 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 ARPC4P59998 168 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 C5orf64Q2M2E5 130 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 ZNF329Q86UD4 541 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 HOGA1Q86XE5 327 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 STPG2Q8N412 459 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 CMTM3Q96MX0 182 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 ZNF107Q9UII5 783 aaPredicted RBP10.93□□□□□ -0.66
UPF1-205ENST00000598209 OR2W1Q9Y3N9 320 aa10.93□□□□□ -0.66
UPF1-205ENST00000598209 MGAM2Q2M2H8 2515 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 A0A1W2PRX2 142 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 TCRBV4S1A1TA0A5B7 111 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 MEIS3P1A6NDR6 274 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 RBBP9O75884 186 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 APOA1P02647 267 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 OPN1MWP04001 364 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 OPN1MW2P0DN77 364 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 OPN1MW3P0DN78 364 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 LUMP51884 338 aaPredicted RBP10.92□□□□□ -0.66
UPF1-205ENST00000598209 SLC35B1P78383 322 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 MZT2AQ6P582 158 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 PDPNQ86YL7 162 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 CLVS1Q8IUQ0 354 aaPredicted RBP10.92□□□□□ -0.66
UPF1-205ENST00000598209 RNF5Q99942 180 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 FBXL15Q9H469 300 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 SLC35D1Q9NTN3 355 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 PKD1L1Q8TDX9 2849 aa10.92□□□□□ -0.66
UPF1-205ENST00000598209 NBEAL1Q6ZS30 2694 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 SMIM31A0A1B0GVY4 71 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 RRHO14718 337 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 HPGDSO60760 199 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 HLA-DRB1P01911 266 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 HLA-DQB1P01920 261 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 IGKV1-16P04430 117 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 ZNF182P17025 639 aaPredicted RBP10.91□□□□□ -0.66
UPF1-205ENST00000598209 RPL5P46777 297 aaKnown RBP10.91□□□□□ -0.66
UPF1-205ENST00000598209 THBS3P49746 956 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 RPS16P62249 146 aaKnown RBP10.91□□□□□ -0.66
UPF1-205ENST00000598209 KHDC1LQ5JSQ8 128 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 LIN54Q6MZP7 749 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 ZNF645Q8N7E2 425 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 AP3S1Q92572 193 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms