RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 SLC31A2O15432 143 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 DEDDO75618 318 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 RLN2P04090 185 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 SLC25A6P12236 298 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 CCL3L1P16619 93 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 EFNA4P52798 201 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 AP2S1P53680 142 aaPredicted RBP11.72□□□□□ -0.53
USP39-207ENST00000450066 TLE4Q04727 773 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 SMCO1Q147U7 214 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.72□□□□□ -0.53
USP39-207ENST00000450066 OR1S1Q8NH92 325 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 UTP20O75691 2785 aaKnown RBP11.72□□□□□ -0.53
USP39-207ENST00000450066 KMT2BQ9UMN6 2715 aaPredicted RBP11.72□□□□□ -0.53
USP39-207ENST00000450066 LINC00473A8K010 186 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 RAB29O14966 203 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 DUTP33316 252 aaKnown RBP11.72□□□□□ -0.53
USP39-207ENST00000450066 THOC7Q6I9Y2 204 aaKnown RBP11.72□□□□□ -0.53
USP39-207ENST00000450066 TEX261Q6UWH6 196 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 SLC25A48Q6ZT89 311 aaKnown RBP11.72□□□□□ -0.53
USP39-207ENST00000450066 FAM219AQ8IW50 185 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 FOXRED2Q8IWF2 684 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 OR8B3Q8NGG8 313 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 RAB39BQ96DA2 213 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 NEIL1Q96FI4 390 aaPredicted RBP11.72□□□□□ -0.53
USP39-207ENST00000450066 OR8B2Q96RD0 313 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 U3KQ87 197 aa11.72□□□□□ -0.53
USP39-207ENST00000450066 ARID1AO14497 2285 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 A0A1B0GU03 582 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 OVOL3O00110 214 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 ST8SIA3O43173 380 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 RAMP3O60896 148 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 SCGB1D2O95969 90 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 LPAR6P43657 344 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 DLX6P56179 175 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 BRWD1-AS2P59051 145 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 ZNF767PQ75MW2 155 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 SPAG16Q8N0X2 631 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 CD300LFQ8TDQ1 290 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 CHD6Q8TD26 2715 aa11.71□□□□□ -0.53
USP39-207ENST00000450066 USF3Q68DE3 2245 aa11.71□□□□□ -0.54
USP39-207ENST00000450066 A0A1W2PPE3 182 aa11.71□□□□□ -0.54
USP39-207ENST00000450066 C17orf98A8MV24 154 aa11.71□□□□□ -0.54
USP39-207ENST00000450066 K7EPK0 472 aa11.71□□□□□ -0.54
USP39-207ENST00000450066 IGKV1-5P01602 117 aa11.71□□□□□ -0.54
USP39-207ENST00000450066 NUP62P37198 522 aaPredicted RBP11.71□□□□□ -0.54
USP39-207ENST00000450066 ERVFRD-1P60508 538 aa11.71□□□□□ -0.54
USP39-207ENST00000450066 RPL39P5Q59GN2 51 aa11.71□□□□□ -0.54
USP39-207ENST00000450066 FAM71E2Q8N5Q1 922 aa11.71□□□□□ -0.54
USP39-207ENST00000450066 OR8H1Q8NGG4 311 aa11.71□□□□□ -0.54
USP39-207ENST00000450066 GPR146Q96CH1 333 aa11.71□□□□□ -0.54
USP39-207ENST00000450066 RRNAD1Q96FB5 475 aaKnown RBP11.71□□□□□ -0.54
USP39-207ENST00000450066 LSM5Q9Y4Y9 91 aaKnown RBP11.71□□□□□ -0.54
USP39-207ENST00000450066 TACC2O95359 2948 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 LRRK2Q5S007 2527 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 SAA2-SAA4A0A096LPE2 208 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 A0A0G2JRQ6 117 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 M0R1X1 148 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 KCNAB3O43448 404 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 ATG12O94817 140 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 SAA2P0DJI9 122 aaPredicted RBP11.7□□□□□ -0.54
USP39-207ENST00000450066 GNG10P50151 68 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 AKR1C2P52895 323 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 SRSF1Q07955 248 aaKnown RBP eCLIP11.7□□□□□ -0.543e-6■■■■■ 29.6
USP39-207ENST00000450066 OR2B11Q5JQS5 317 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 WDR25Q64LD2 544 aaPredicted RBP11.7□□□□□ -0.54
USP39-207ENST00000450066 ODF3L1Q8IXM7 274 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 RNASE11Q8TAA1 199 aaKnown RBP11.7□□□□□ -0.54
USP39-207ENST00000450066 AQP10Q96PS8 301 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 POMT1Q9Y6A1 747 aa11.7□□□□□ -0.54
USP39-207ENST00000450066 E5RGE8 158 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 NDUFS7O75251 213 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 PITX3O75364 302 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 NKX2-1P43699 371 aaPredicted RBP11.69□□□□□ -0.54
USP39-207ENST00000450066 NCR3LG1Q68D85 454 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 LYG1Q8N1E2 194 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 C8orf31Q8N9H6 132 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 ZNF680Q8NEM1 530 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 C8orf46Q8TAG6 207 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 IGFBPL1Q8WX77 278 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 ZNF251Q9BRH9 671 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 NSG2Q9Y328 171 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 A0A087X0M5 115 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 A0A1B0GX30 115 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 A0A1W2PPH5 198 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 KANTRA0A1W2PQU2 76 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 BCL2L11O43521 198 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 GPR6P46095 362 aaPredicted RBP11.69□□□□□ -0.54
USP39-207ENST00000450066 LINC00205P59089 165 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 ID3Q02535 119 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 C1orf229Q6ZS94 237 aaPredicted RBP11.69□□□□□ -0.54
USP39-207ENST00000450066 C11orf42Q8N5U0 333 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 PATZ1Q9HBE1 687 aaKnown RBP11.69□□□□□ -0.54
USP39-207ENST00000450066 PRELID3BQ9Y3B1 194 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 MMP24Q9Y5R2 645 aa11.69□□□□□ -0.54
USP39-207ENST00000450066 YLPM1P49750 1951 aaKnown RBP11.69□□□□□ -0.54
USP39-207ENST00000450066 RBFOX2O43251 390 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP39-207ENST00000450066 S1PR2O95136 353 aa11.68□□□□□ -0.54
USP39-207ENST00000450066 IGHV1-8P0DP01 117 aa11.68□□□□□ -0.54
USP39-207ENST00000450066 ZNF816Q0VGE8 651 aaPredicted RBP11.68□□□□□ -0.54
USP39-207ENST00000450066 CXorf66Q5JRM2 361 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms