RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 CLDN1O95832 211 aa11.47□□□□□ -0.57
COL6A3-207ENST00000433762 MDKP21741 143 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-207ENST00000433762 GNB2P62879 340 aa11.47□□□□□ -0.57
COL6A3-207ENST00000433762 ARG2P78540 354 aa11.47□□□□□ -0.57
COL6A3-207ENST00000433762 HTD2P86397 168 aa11.47□□□□□ -0.57
COL6A3-207ENST00000433762 ZNF343Q6P1L6 599 aa11.47□□□□□ -0.57
COL6A3-207ENST00000433762 ACP7Q6ZNF0 438 aa11.47□□□□□ -0.57
COL6A3-207ENST00000433762 FAM214BQ7L5A3 538 aa11.47□□□□□ -0.57
COL6A3-207ENST00000433762 MYPOPQ86VE0 399 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-207ENST00000433762 KLF14Q8TD94 323 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-207ENST00000433762 LHX4Q969G2 390 aa11.47□□□□□ -0.57
COL6A3-207ENST00000433762 DIRC2Q96SL1 478 aa11.47□□□□□ -0.57
COL6A3-207ENST00000433762 PYGO2Q9BRQ0 406 aa11.47□□□□□ -0.57
COL6A3-207ENST00000433762 BCL2L14Q9BZR8 327 aa11.47□□□□□ -0.57
COL6A3-207ENST00000433762 OR2D2Q9H210 308 aa11.47□□□□□ -0.57
COL6A3-207ENST00000433762 TGIF2-C20orf24A0A0A6YYL0 155 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 UBE2L5PA0A1B0GUS4 154 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 PSPNO60542 156 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 KBTBD11O94819 623 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 HBZP02008 142 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 ADH4P08319 380 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 CELA3BP08861 270 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 OR3A1P47881 315 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 PSMB3P49720 205 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 SSX7Q7RTT5 188 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 TGIF2LYQ8IUE0 185 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 C11orf53Q8IXP5 236 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 PRR18Q8N4B5 295 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 GGACTQ9BVM4 153 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 SPEGQ15772 3267 aa11.46□□□□□ -0.57
COL6A3-207ENST00000433762 ODAMA1E959 279 aa11.46□□□□□ -0.58
COL6A3-207ENST00000433762 CEBPZOSA8MTT3 80 aa11.46□□□□□ -0.58
COL6A3-207ENST00000433762 CDX4O14627 284 aaPredicted RBP11.46□□□□□ -0.58
COL6A3-207ENST00000433762 NKX6-1P78426 367 aaPredicted RBP11.46□□□□□ -0.58
COL6A3-207ENST00000433762 SMIM21Q3B7S5 101 aa11.46□□□□□ -0.58
COL6A3-207ENST00000433762 RNFT1Q5M7Z0 435 aa11.46□□□□□ -0.58
COL6A3-207ENST00000433762 FAM90A1Q86YD7 464 aa11.46□□□□□ -0.58
COL6A3-207ENST00000433762 RPP25LQ8N5L8 163 aaKnown RBP11.46□□□□□ -0.58
COL6A3-207ENST00000433762 FAM169BQ8N8A8 192 aa11.46□□□□□ -0.58
COL6A3-207ENST00000433762 OR10P1Q8NGE3 313 aa11.46□□□□□ -0.58
COL6A3-207ENST00000433762 OR1L1Q8NH94 360 aa11.46□□□□□ -0.58
COL6A3-207ENST00000433762 ACTR3CQ9C0K3 210 aaPredicted RBP11.46□□□□□ -0.58
COL6A3-207ENST00000433762 WASF3Q9UPY6 502 aa11.46□□□□□ -0.58
COL6A3-207ENST00000433762 TRAV39A0A0B4J263 110 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 SMCO3A2RU48 225 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 LINC00587B1AMM8 73 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 C17orf112F2Z3M2 114 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 PPP1R2P9O14990 202 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 PTBP3O95758 552 aaKnown RBP11.45□□□□□ -0.58
COL6A3-207ENST00000433762 TNFSF10P50591 281 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 NDUFA6P56556 154 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 NCMAPQ5T1S8 102 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 GPR179Q6PRD1 2367 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 WDFY4Q6ZS81 3184 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 PTPRBP23467 1997 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 PHOX2AO14813 284 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 MLNRO43193 412 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 VENTXO95231 258 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 HOXC12P31275 282 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 TMEM241Q24JQ0 296 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 DTD1Q8TEA8 209 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 EDARADDQ8WWZ3 215 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 C5orf30Q96GV9 206 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 COQ2Q96H96 371 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 AHCTF1Q8WYP5 2266 aa11.45□□□□□ -0.58
COL6A3-207ENST00000433762 IFITM10A6NMD0 228 aa11.44□□□□□ -0.58
COL6A3-207ENST00000433762 AQP7O14520 342 aa11.44□□□□□ -0.58
COL6A3-207ENST00000433762 GRPP07492 148 aa11.44□□□□□ -0.58
COL6A3-207ENST00000433762 RPL30P62888 115 aaKnown RBP11.44□□□□□ -0.58
COL6A3-207ENST00000433762 PDLIM3Q53GG5 364 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-207ENST00000433762 HES3Q5TGS1 186 aa11.44□□□□□ -0.58
COL6A3-207ENST00000433762 MBNL2Q5VZF2 373 aaKnown RBP11.44□□□□□ -0.58
COL6A3-207ENST00000433762 NCR3LG1Q68D85 454 aa11.44□□□□□ -0.58
COL6A3-207ENST00000433762 RAB1CQ92928 201 aa11.44□□□□□ -0.58
COL6A3-207ENST00000433762 SMIM7Q9BQ49 75 aa11.44□□□□□ -0.58
COL6A3-207ENST00000433762 SRD5A3Q9H8P0 318 aa11.44□□□□□ -0.58
COL6A3-207ENST00000433762 VPS13AQ96RL7 3174 aa11.44□□□□□ -0.58
COL6A3-207ENST00000433762 DOCK7Q96N67 2140 aa11.44□□□□□ -0.58
COL6A3-207ENST00000433762 MPDU1O75352 247 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 TRGC2P03986 189 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 FGF8P55075 233 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-207ENST00000433762 ERVS71-1P61550 626 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 ALKBH6Q3KRA9 238 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 ACSM6Q6P461 480 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 WDR82Q6UXN9 313 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 H2BFWTQ7Z2G1 175 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 HIST3H2BBQ8N257 126 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 ANAPC16Q96DE5 110 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 URGCP-MRPS24S4R325 110 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 CACNA1GO43497 2377 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 CACNA1HO95180 2353 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 MYO15AQ9UKN7 3530 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 RBFOX2O43251 390 aaKnown RBP eCLIP11.43□□□□□ -0.58
COL6A3-207ENST00000433762 RAMP3O60896 148 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 YIF1AO95070 293 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 S1PR2O95136 353 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 IGKV1D-33P01593 117 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 IGKV1-33P01594 117 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 IGLV1-44P01699 117 aa11.43□□□□□ -0.58
COL6A3-207ENST00000433762 G6PCP35575 357 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms