RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ZNF260Q3ZCT1 412 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 ABCA11PQ4W5N1 156 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 GPR107Q5VW38 600 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 KLHDC1Q8N7A1 406 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 SAMD12Q8N8I0 201 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 OR8H1Q8NGG4 311 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 NUDCD2Q8WVJ2 157 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 ABCG5Q9H222 651 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 RDH8Q9NYR8 311 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 ZNF221Q9UK13 617 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 TRAV18A0A075B6X5 111 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 TRBV6-7A0A0A0MS04 114 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 IGHV3-72A0A0B4J1Y9 119 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 OR5H14A6NHG9 310 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 CTXN2P0C2S0 81 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 VSIG10L2P0DP72 767 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 GPR12P47775 334 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 RORCP51449 518 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 EBI3Q14213 229 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 HNF4GQ14541 408 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 HERPUD1Q15011 391 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 C9orf152Q5JTZ5 239 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 TMEM69Q5SWH9 247 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 MZT2AQ6P582 158 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 C5orf24Q7Z6I8 188 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 ODF3L1Q8IXM7 274 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.37□□□□□ -0.75
CLK3-224ENST00000568605 RAB2BQ8WUD1 216 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 MAFIPQ8WZ33 124 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 EAF1Q96JC9 268 aaPredicted RBP10.37□□□□□ -0.75
CLK3-224ENST00000568605 CMTM3Q96MX0 182 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 CITED1Q99966 193 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 BCL7BQ9BQE9 202 aa10.37□□□□□ -0.75
CLK3-224ENST00000568605 MRPL20Q9BYC9 149 aaKnown RBP10.37□□□□□ -0.75
CLK3-224ENST00000568605 ZNF230Q9UIE0 474 aaPredicted RBP10.37□□□□□ -0.75
CLK3-224ENST00000568605 RBM7Q9Y580 266 aaKnown RBP10.37□□□□□ -0.75
CLK3-224ENST00000568605 NCBP2LA6PVI3 153 aaKnown RBP10.36□□□□□ -0.75
CLK3-224ENST00000568605 M0QZ24 198 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 XRCC3O43542 346 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 TFAP2AP05549 437 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 GSTT2P0CG29 244 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 GSTT2BP0CG30 244 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 SOX6P35712 828 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 CBX5P45973 191 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 OR3A3P47888 321 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 BLCAPP62952 87 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 CTF1Q16619 201 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 IGSF11Q5DX21 431 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 C5orf56Q8N8D9 126 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 ABHD14BQ96IU4 210 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 NABP2Q9BQ15 211 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 TOLLIPQ9H0E2 274 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 C11orf54Q9H0W9 315 aaPredicted RBP10.36□□□□□ -0.75
CLK3-224ENST00000568605 SERTAD4Q9NUC0 356 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 LIN7CQ9NUP9 197 aaKnown RBP10.36□□□□□ -0.75
CLK3-224ENST00000568605 SCOCQ9UIL1 159 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 SIGLEC9Q9Y336 463 aa10.36□□□□□ -0.75
CLK3-224ENST00000568605 IGKV1-6A0A0C4DH72 117 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 SMIM31A0A1B0GVY4 71 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 FBXO24O75426 580 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 APOA1P02647 267 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 MC5RP33032 325 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 RPL5P46777 297 aaKnown RBP10.35□□□□□ -0.75
CLK3-224ENST00000568605 ARPC4P59998 168 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 C2orf68Q2NKX9 166 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 CNIH2Q6PI25 160 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 CLVS1Q8IUQ0 354 aaPredicted RBP10.35□□□□□ -0.75
CLK3-224ENST00000568605 ST6GALNAC5Q9BVH7 336 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 NAA50Q9GZZ1 169 aaKnown RBP10.35□□□□□ -0.75
CLK3-224ENST00000568605 PARP12Q9H0J9 701 aaKnown RBP10.35□□□□□ -0.75
CLK3-224ENST00000568605 OR2D2Q9H210 308 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 AUNIPQ9H7T9 357 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 IFT46Q9NQC8 304 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 COMMD3Q9UBI1 195 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 ANXA10Q9UJ72 324 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 ELF5Q9UKW6 265 aaPredicted RBP10.35□□□□□ -0.75
CLK3-224ENST00000568605 WASHC3Q9Y3C0 194 aa10.35□□□□□ -0.75
CLK3-224ENST00000568605 H7C2Y5 167 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 KCNAB3O43448 404 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 RBBP9O75884 186 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 APOA2P02652 100 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 ZNF182P17025 639 aaPredicted RBP10.34□□□□□ -0.75
CLK3-224ENST00000568605 CBX3Q13185 183 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 MMDQ15546 238 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 TMEM95Q3KNT9 176 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 FBLN7Q53RD9 439 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 RPL39P5Q59GN2 51 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 FAM131AQ6UXB0 335 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 FOXRED2Q8IWF2 684 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 Q8N6K4 173 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 BEST4Q8NFU0 473 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 RASL11BQ9BPW5 248 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 ZNF251Q9BRH9 671 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 AGMATQ9BSE5 352 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 KIAA1456Q9P272 454 aa10.34□□□□□ -0.75
CLK3-224ENST00000568605 SSX5O60225 188 aa10.33□□□□□ -0.76
CLK3-224ENST00000568605 AMY1AP04745 511 aa10.33□□□□□ -0.76
CLK3-224ENST00000568605 AMY2AP04746 511 aa10.33□□□□□ -0.76
CLK3-224ENST00000568605 OR8U9P0C7N5 309 aa10.33□□□□□ -0.76
CLK3-224ENST00000568605 TMBIM6P55061 237 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms