RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 DIRAS3O95661 229 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 GSTP1P09211 210 aaKnown RBP12.89□□□□□ -0.35
LSM1-205ENST00000523511 SCTP09683 121 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 SAA2P0DJI9 122 aaPredicted RBP12.89□□□□□ -0.35
LSM1-205ENST00000523511 CD33P20138 364 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 VDAC1P21796 283 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 PITPNAQ00169 270 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 SRSF7Q16629 238 aaKnown RBP eCLIP12.89□□□□□ -0.35
LSM1-205ENST00000523511 FBLN7Q53RD9 439 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 ZNF329Q86UD4 541 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 ODF3L1Q8IXM7 274 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 OR10J5Q8NHC4 309 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 RNF5Q99942 180 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 HDHD3Q9BSH5 251 aaPredicted RBP12.89□□□□□ -0.35
LSM1-205ENST00000523511 PLSCR3Q9NRY6 295 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 TET2Q6N021 2002 aaPredicted RBP12.88□□□□□ -0.35
LSM1-205ENST00000523511 TRRAPQ9Y4A5 3859 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 A0A075B6Q4 140 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 A0A087WXM4 84 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 H7C2Y5 167 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 FABP7O15540 132 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 RBBP9O75884 186 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 HIST1H1DP16402 221 aaKnown RBP12.88□□□□□ -0.35
LSM1-205ENST00000523511 CD36P16671 472 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 OR3A3P47888 321 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 SCAND1P57086 179 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 ACTBP60709 375 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 NEDD8Q15843 81 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 NOL4LQ96MY1 436 aaPredicted RBP12.88□□□□□ -0.35
LSM1-205ENST00000523511 MRPL20Q9BYC9 149 aaKnown RBP12.88□□□□□ -0.35
LSM1-205ENST00000523511 C11orf54Q9H0W9 315 aaPredicted RBP12.88□□□□□ -0.35
LSM1-205ENST00000523511 IFI27L2Q9H2X8 130 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 ZNF107Q9UII5 783 aaPredicted RBP12.88□□□□□ -0.35
LSM1-205ENST00000523511 DAPK2Q9UIK4 370 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 RBM7Q9Y580 266 aaKnown RBP12.88□□□□□ -0.35
LSM1-205ENST00000523511 MGAM2Q2M2H8 2515 aa12.88□□□□□ -0.35
LSM1-205ENST00000523511 LOC100506127A0A0U1RQW1 187 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 SHISA3A0PJX4 238 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 RAB27BO00194 218 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 NBR2O15453 112 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 TNFAIP8O95379 198 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 DUS4LO95620 317 aaKnown RBP12.87□□□□□ -0.35
LSM1-205ENST00000523511 GNB3P16520 340 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 F2RL1P55085 397 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 CDNFQ49AH0 187 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 CXorf66Q5JRM2 361 aaPredicted RBP12.87□□□□□ -0.35
LSM1-205ENST00000523511 HIST2H2BDQ6DRA6 164 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 LIN54Q6MZP7 749 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 C5orf24Q7Z6I8 188 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 CROCCP3Q8IVE0 287 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 FAM71E2Q8N5Q1 922 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 WFDC9Q8NEX5 89 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 GINS4Q9BRT9 223 aa12.87□□□□□ -0.35
LSM1-205ENST00000523511 ADARB2-AS1A8MUL3 147 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 NUDT19A8MXV4 375 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 MFNGO00587 321 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 BET1O15155 118 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 ELANEP08246 267 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 FCGR3AP08637 254 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 CTXN2P0C2S0 81 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 SLC2A2P11168 524 aaPredicted RBP12.86□□□□□ -0.35
LSM1-205ENST00000523511 SDC2P34741 201 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 TAGLNQ01995 201 aaKnown RBP12.86□□□□□ -0.35
LSM1-205ENST00000523511 CBX3Q13185 183 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 PLGLAQ15195 96 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 PDLIM3Q53GG5 364 aaPredicted RBP12.86□□□□□ -0.35
LSM1-205ENST00000523511 TCTEX1D4Q5JR98 221 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 SFXN4Q6P4A7 337 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.86□□□□□ -0.35
LSM1-205ENST00000523511 TSPAN14Q8NG11 270 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 NPBQ8NG41 125 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 ABHD14BQ96IU4 210 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 AGMATQ9BSE5 352 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 GPR61Q9BZJ8 451 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 OR51E2Q9H255 320 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 DCSTAMPQ9H295 470 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 RDH8Q9NYR8 311 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 OR1A1Q9P1Q5 309 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 LINC00527Q9UJ94 153 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 ZNF580Q9UK33 172 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 KCNK7Q9Y2U2 307 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 WASHC3Q9Y3C0 194 aa12.86□□□□□ -0.35
LSM1-205ENST00000523511 APOA2P02652 100 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 IGF1P05019 195 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 TFAP2AP05549 437 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 CT45A6P0DMU7 189 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 CT45A5P0DMU8 189 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 CT45A7P0DMV0 189 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 DTYMKP23919 212 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 MOGAT2Q3SYC2 334 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 RPL39P5Q59GN2 51 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 TMEM65Q6PI78 240 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 REC114Q7Z4M0 266 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.85□□□□□ -0.35
LSM1-205ENST00000523511 RNF150Q9ULK6 438 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 GAB2Q9UQC2 676 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 ETV7Q9Y603 341 aa12.85□□□□□ -0.35
LSM1-205ENST00000523511 PKD1L1Q8TDX9 2849 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 WIPF1O43516 503 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 HLA-DRB1P01911 266 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms