RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 TCTEX1D2Q8WW35 142 aa11.48□□□□□ -0.57
PTPN1-202ENST00000541713 LYRM2Q9NU23 88 aaPredicted RBP11.48□□□□□ -0.57
PTPN1-202ENST00000541713 COL12A1Q99715 3063 aa11.48□□□□□ -0.57
PTPN1-202ENST00000541713 K7N7A8 449 aa11.48□□□□□ -0.57
PTPN1-202ENST00000541713 CD46P15529 392 aa11.48□□□□□ -0.57
PTPN1-202ENST00000541713 VWA1Q6PCB0 445 aa11.48□□□□□ -0.57
PTPN1-202ENST00000541713 SSX7Q7RTT5 188 aa11.48□□□□□ -0.57
PTPN1-202ENST00000541713 ODF3L1Q8IXM7 274 aa11.48□□□□□ -0.57
PTPN1-202ENST00000541713 OR5A2Q8NGI9 324 aa11.48□□□□□ -0.57
PTPN1-202ENST00000541713 A0A0U1RQK1 487 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 LINC00587B1AMM8 73 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 KLRC4-KLRK1H3BQV0 150 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 ST8SIA5O15466 376 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 YKT6O15498 198 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 IGKV1-39P01597 117 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 OPN1MWP04001 364 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 IGKV1D-39P04432 117 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 CXCL1P09341 107 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 OPN1MW2P0DN77 364 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 OPN1MW3P0DN78 364 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 PAX9P55771 341 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 UBE2G2P60604 165 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 TGFBR3Q03167 851 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 CDPF1Q6NVV7 123 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 ASCL4Q6XD76 172 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 TIMM8AO60220 97 aaPredicted RBP11.47□□□□□ -0.57
PTPN1-202ENST00000541713 CA11O75493 328 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 HEXAP06865 529 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 ARR3P36575 388 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 GLIPR1P48060 266 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 EIF3IQ13347 325 aaKnown RBP11.47□□□□□ -0.57
PTPN1-202ENST00000541713 ADIRFQ15847 76 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 C10orf91Q5T1B1 145 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 FBXW9Q5XUX1 488 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 ZNF787Q6DD87 383 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 SPSB3Q6PJ21 355 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 GTF3AQ92664 365 aaKnown RBP11.47□□□□□ -0.57
PTPN1-202ENST00000541713 SSX3Q99909 188 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 DECR2Q9NUI1 292 aa11.47□□□□□ -0.57
PTPN1-202ENST00000541713 CLEC18AA5D8T8 446 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 DNPH1O43598 174 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 NDUFA2O43678 99 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 SYNGR2O43760 224 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 MT-ND4LP03901 98 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 EDDM3BP56851 147 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 HLA-DRB3P79483 266 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 TBC1D28Q2M2D7 210 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 CLEC18CQ8NCF0 446 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 NIPSNAP3BQ9BS92 247 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 COA4Q9NYJ1 87 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 PSG11Q9UQ72 335 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 ZGRF1Q86YA3 2104 aa11.46□□□□□ -0.57
PTPN1-202ENST00000541713 IGKV1-5P01602 117 aa11.46□□□□□ -0.58
PTPN1-202ENST00000541713 HOXC12P31275 282 aa11.46□□□□□ -0.58
PTPN1-202ENST00000541713 HOXA1P49639 335 aaPredicted RBP11.46□□□□□ -0.58
PTPN1-202ENST00000541713 FOXF2Q12947 444 aa11.46□□□□□ -0.58
PTPN1-202ENST00000541713 PSG7Q13046 419 aa11.46□□□□□ -0.58
PTPN1-202ENST00000541713 NMSQ5H8A3 153 aa11.46□□□□□ -0.58
PTPN1-202ENST00000541713 OR4C12Q96R67 309 aa11.46□□□□□ -0.58
PTPN1-202ENST00000541713 YLPM1P49750 1951 aaKnown RBP11.46□□□□□ -0.58
PTPN1-202ENST00000541713 MUC6Q6W4X9 2439 aa11.46□□□□□ -0.58
PTPN1-202ENST00000541713 NUDT19A8MXV4 375 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 TRGC2P03986 189 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 SNRPCP09234 159 aaKnown RBP11.45□□□□□ -0.58
PTPN1-202ENST00000541713 ACP1P24666 158 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 RAB2AP61019 212 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 C9orf152Q5JTZ5 239 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 DRAM1Q8N682 238 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 ZZEF1O43149 2961 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 LY86O95711 162 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 TDGF1P13385 188 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 ERVFRD-1P60508 538 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 RTP5Q14D33 572 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 Q3ZCU0 254 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 ZNF324BQ6AW86 544 aaPredicted RBP11.45□□□□□ -0.58
PTPN1-202ENST00000541713 COLCA1Q6ZS62 124 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 FGFRL1Q8N441 504 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 NINJ1Q92982 152 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 SPSB4Q96A44 273 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 WFIKKN1Q96NZ8 548 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 GALR2O43603 387 aaPredicted RBP11.45□□□□□ -0.58
PTPN1-202ENST00000541713 UCP1P25874 307 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 RPL30P62888 115 aaKnown RBP11.45□□□□□ -0.58
PTPN1-202ENST00000541713 BAXQ07812 192 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 DEFB124Q8NES8 71 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 ZNF391Q9UJN7 358 aa11.45□□□□□ -0.58
PTPN1-202ENST00000541713 CDX4O14627 284 aaPredicted RBP11.44□□□□□ -0.58
PTPN1-202ENST00000541713 SCAF4O95104 1147 aaKnown RBP11.44□□□□□ -0.58
PTPN1-202ENST00000541713 CD59P13987 128 aa11.44□□□□□ -0.58
PTPN1-202ENST00000541713 ZNF561Q8N587 486 aa11.44□□□□□ -0.58
PTPN1-202ENST00000541713 C15orf54Q8N8G6 183 aa11.44□□□□□ -0.58
PTPN1-202ENST00000541713 FDCSPQ8NFU4 85 aa11.44□□□□□ -0.58
PTPN1-202ENST00000541713 Q8WTZ3 238 aa11.44□□□□□ -0.58
PTPN1-202ENST00000541713 LHX4Q969G2 390 aa11.44□□□□□ -0.58
PTPN1-202ENST00000541713 RTL8AQ9BWD3 113 aa11.44□□□□□ -0.58
PTPN1-202ENST00000541713 SCRT1Q9BWW7 348 aa11.44□□□□□ -0.58
PTPN1-202ENST00000541713 RNF122Q9H9V4 155 aa11.44□□□□□ -0.58
PTPN1-202ENST00000541713 MIOXQ9UGB7 285 aa11.44□□□□□ -0.58
PTPN1-202ENST00000541713 IGF2RP11717 2491 aa11.44□□□□□ -0.58
PTPN1-202ENST00000541713 PLXNB1O43157 2135 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms