RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 SPARTQ8N0X7 666 aa16.36■□□□□ 0.21
VPS28-206ENST00000526734 OR2AK2Q8NG84 335 aa16.36■□□□□ 0.21
VPS28-206ENST00000526734 R3HDM4Q96D70 268 aa16.36■□□□□ 0.21
VPS28-206ENST00000526734 GHITMQ9H3K2 345 aa16.36■□□□□ 0.21
VPS28-206ENST00000526734 RAB22AQ9UL26 194 aa16.36■□□□□ 0.21
VPS28-206ENST00000526734 IGHV3-72A0A0B4J1Y9 119 aa16.35■□□□□ 0.21
VPS28-206ENST00000526734 PSMB11A5LHX3 300 aa16.35■□□□□ 0.21
VPS28-206ENST00000526734 SH2D7A6NKC9 451 aaPredicted RBP16.35■□□□□ 0.21
VPS28-206ENST00000526734 LDLRAD4O15165 306 aa16.35■□□□□ 0.21
VPS28-206ENST00000526734 WIPF1O43516 503 aa16.35■□□□□ 0.21
VPS28-206ENST00000526734 IGHG2P01859 326 aa16.35■□□□□ 0.21
VPS28-206ENST00000526734 C2orf76Q3KRA6 126 aa16.35■□□□□ 0.21
VPS28-206ENST00000526734 SLC35E3Q7Z769 313 aa16.35■□□□□ 0.21
VPS28-206ENST00000526734 COMMD1Q8N668 190 aa16.35■□□□□ 0.21
VPS28-206ENST00000526734 AK3Q9UIJ7 227 aa16.35■□□□□ 0.21
VPS28-206ENST00000526734 TCRBV4S1A1TA0A5B7 111 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 IFITM5A6NNB3 132 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 NCBP2LA6PVI3 153 aaKnown RBP16.34■□□□□ 0.21
VPS28-206ENST00000526734 ITGB1BP1O14713 200 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 KCNAB3O43448 404 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 RAB3BP20337 219 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 PSMB9P28065 219 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 VEGFCP49767 419 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 CLDN12P56749 244 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 SLC35B1P78383 322 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 LSAMPQ13449 338 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 SETD6Q8TBK2 473 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 IL1F10Q8WWZ1 152 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 ABCG5Q9H222 651 aa16.34■□□□□ 0.21
VPS28-206ENST00000526734 SERPINE3A8MV23 424 aa16.33■□□□□ 0.2
VPS28-206ENST00000526734 RAB6AP20340 208 aa16.33■□□□□ 0.2
VPS28-206ENST00000526734 FGF9P31371 208 aaPredicted RBP16.33■□□□□ 0.2
VPS28-206ENST00000526734 HLA-DRB3P79483 266 aa16.33■□□□□ 0.2
VPS28-206ENST00000526734 MRPS15P82914 257 aaKnown RBP16.33■□□□□ 0.2
VPS28-206ENST00000526734 HES5Q5TA89 166 aa16.33■□□□□ 0.2
VPS28-206ENST00000526734 ZNF773Q6PK81 442 aa16.33■□□□□ 0.2
VPS28-206ENST00000526734 Q8N9W7 124 aa16.33■□□□□ 0.2
VPS28-206ENST00000526734 EDARADDQ8WWZ3 215 aa16.33■□□□□ 0.2
VPS28-206ENST00000526734 PTX4Q96A99 478 aa16.33■□□□□ 0.2
VPS28-206ENST00000526734 CYYR1Q96J86 154 aa16.33■□□□□ 0.2
VPS28-206ENST00000526734 CMSS1Q9BQ75 279 aaKnown RBP16.33■□□□□ 0.2
VPS28-206ENST00000526734 GON7Q9BXV9 100 aa16.33■□□□□ 0.2
VPS28-206ENST00000526734 PECRQ9BY49 303 aa16.33■□□□□ 0.2
VPS28-206ENST00000526734 PIPOXQ9P0Z9 390 aa16.33■□□□□ 0.2
VPS28-206ENST00000526734 TMEM272A0A1B0GTI8 110 aa16.32■□□□□ 0.2
VPS28-206ENST00000526734 AP4M1O00189 453 aa16.32■□□□□ 0.2
VPS28-206ENST00000526734 GADD45AP24522 165 aa16.32■□□□□ 0.2
VPS28-206ENST00000526734 TMEM50BP56557 158 aa16.32■□□□□ 0.2
VPS28-206ENST00000526734 PDLIM3Q53GG5 364 aaPredicted RBP16.32■□□□□ 0.2
VPS28-206ENST00000526734 TCTEX1D4Q5JR98 221 aa16.32■□□□□ 0.2
VPS28-206ENST00000526734 HIST2H2BDQ6DRA6 164 aa16.32■□□□□ 0.2
VPS28-206ENST00000526734 ZNF833PQ6ZTB9 187 aa16.32■□□□□ 0.2
VPS28-206ENST00000526734 ARHGAP5-AS1Q96IT6 56 aa16.32■□□□□ 0.2
VPS28-206ENST00000526734 S1PR3Q99500 378 aa16.32■□□□□ 0.2
VPS28-206ENST00000526734 RASL11BQ9BPW5 248 aa16.32■□□□□ 0.2
VPS28-206ENST00000526734 Q9N2K0 584 aa16.32■□□□□ 0.2
VPS28-206ENST00000526734 SLC23A1Q9UHI7 598 aa16.32■□□□□ 0.2
VPS28-206ENST00000526734 RAB29O14966 203 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 PF4V1P10720 104 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 ZBTB25P24278 435 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 SLC6A1P30531 599 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 GPR12P47775 334 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 ARL6IP1Q15041 203 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 C22orf42Q6IC83 251 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 Q6ZPA2 131 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 ODF3L1Q8IXM7 274 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 RAB3CQ96E17 227 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 NABP2Q9BQ15 211 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 IFI27L2Q9H2X8 130 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 PLSCR3Q9NRY6 295 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 STUB1Q9UNE7 303 aa16.31■□□□□ 0.2
VPS28-206ENST00000526734 NOTCH1P46531 2555 aa16.3■□□□□ 0.2
VPS28-206ENST00000526734 SAA2-SAA4A0A096LPE2 208 aa16.3■□□□□ 0.2
VPS28-206ENST00000526734 SHISA3A0PJX4 238 aa16.3■□□□□ 0.2
VPS28-206ENST00000526734 METTL21EPA6NDL7 271 aa16.3■□□□□ 0.2
VPS28-206ENST00000526734 RRP9O43818 475 aaKnown RBP16.3■□□□□ 0.2
VPS28-206ENST00000526734 SAA2P0DJI9 122 aaPredicted RBP16.3■□□□□ 0.2
VPS28-206ENST00000526734 OR10A3P58181 314 aa16.3■□□□□ 0.2
VPS28-206ENST00000526734 KCTD21Q4G0X4 260 aa16.3■□□□□ 0.2
VPS28-206ENST00000526734 SAMD5Q5TGI4 173 aa16.3■□□□□ 0.2
VPS28-206ENST00000526734 TPRA1Q86W33 373 aa16.3■□□□□ 0.2
VPS28-206ENST00000526734 STPG2Q8N412 459 aa16.3■□□□□ 0.2
VPS28-206ENST00000526734 FAM71E2Q8N5Q1 922 aa16.3■□□□□ 0.2
VPS28-206ENST00000526734 HDHD3Q9BSH5 251 aaPredicted RBP16.3■□□□□ 0.2
VPS28-206ENST00000526734 MRPL20Q9BYC9 149 aaKnown RBP16.3■□□□□ 0.2
VPS28-206ENST00000526734 ZNF580Q9UK33 172 aa16.3■□□□□ 0.2
VPS28-206ENST00000526734 SSR3Q9UNL2 185 aa16.3■□□□□ 0.2
VPS28-206ENST00000526734 A0A1W2PRX2 142 aa16.29■□□□□ 0.2
VPS28-206ENST00000526734 ZNF736B4DX44 427 aaPredicted RBP16.29■□□□□ 0.2
VPS28-206ENST00000526734 HSPA12AO43301 675 aa16.29■□□□□ 0.2
VPS28-206ENST00000526734 DIRAS3O95661 229 aa16.29■□□□□ 0.2
VPS28-206ENST00000526734 CD3GP09693 182 aa16.29■□□□□ 0.2
VPS28-206ENST00000526734 SERPINB10P48595 397 aa16.29■□□□□ 0.2
VPS28-206ENST00000526734 KHDC1LQ5JSQ8 128 aa16.29■□□□□ 0.2
VPS28-206ENST00000526734 PLAC9Q5JTB6 97 aa16.29■□□□□ 0.2
VPS28-206ENST00000526734 KPRPQ5T749 579 aaPredicted RBP16.29■□□□□ 0.2
VPS28-206ENST00000526734 OR10R2Q8NGX6 335 aa16.29■□□□□ 0.2
VPS28-206ENST00000526734 CENPOQ9BU64 300 aa16.29■□□□□ 0.2
VPS28-206ENST00000526734 ZFP57Q9NU63 452 aa16.29■□□□□ 0.2
VPS28-206ENST00000526734 TXNL4BQ9NX01 149 aaKnown RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms