RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 HILPDAQ9Y5L2 63 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 A0A0A6YYD4 124 aa12.15□□□□□ -0.46
UPF1-202ENST00000594243 METTL21EPA6NDL7 271 aa12.15□□□□□ -0.46
UPF1-202ENST00000594243 SDCBPO00560 298 aaPredicted RBP12.15□□□□□ -0.46
UPF1-202ENST00000594243 RCC1P18754 421 aaPredicted RBP12.15□□□□□ -0.46
UPF1-202ENST00000594243 RAB6AP20340 208 aa12.15□□□□□ -0.46
UPF1-202ENST00000594243 PAX6P26367 422 aa12.15□□□□□ -0.46
UPF1-202ENST00000594243 SDC2P34741 201 aa12.15□□□□□ -0.46
UPF1-202ENST00000594243 DYNLT3P51808 116 aa12.15□□□□□ -0.46
UPF1-202ENST00000594243 LDLRAD2Q5SZI1 272 aa12.15□□□□□ -0.46
UPF1-202ENST00000594243 NR2C2APQ86WQ0 139 aa12.15□□□□□ -0.46
UPF1-202ENST00000594243 DYNAPQ8N1N2 210 aa12.15□□□□□ -0.46
UPF1-202ENST00000594243 MRPL30Q8TCC3 161 aaKnown RBP12.15□□□□□ -0.46
UPF1-202ENST00000594243 MMP28Q9H239 520 aa12.15□□□□□ -0.46
UPF1-202ENST00000594243 PSG11Q9UQ72 335 aa12.15□□□□□ -0.46
UPF1-202ENST00000594243 A0A1B0GUS0 222 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 POM121CA8CG34 1229 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 FOXI3A8MTJ6 420 aaPredicted RBP12.14□□□□□ -0.47
UPF1-202ENST00000594243 C12orf77C9JDV5 145 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 F2RL2O00254 374 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 BRS3P32247 399 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 TMEM50BP56557 158 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 Q3ZCU0 254 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 PLA1AQ53H76 456 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 AWAT1Q58HT5 328 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 LIAT1Q6ZQX7 453 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 PRR18Q8N4B5 295 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 YIPF6Q96EC8 236 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 CENPOQ9BU64 300 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 TAF9BQ9HBM6 251 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 CHMP1AQ9HD42 196 aaPredicted RBP12.14□□□□□ -0.47
UPF1-202ENST00000594243 RAB18Q9NP72 206 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 GFOD1Q9NXC2 390 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 C1RLQ9NZP8 487 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 PITPNC1Q9UKF7 332 aa12.14□□□□□ -0.47
UPF1-202ENST00000594243 SMIM30A4D0T7 59 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 OOSP1A8MZH6 123 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 AIREO43918 545 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 TMEM127O75204 238 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 NDUFA7O95182 113 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 IGHV3-7P01780 117 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 HBZP02008 142 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 SLC2A2P11168 524 aaPredicted RBP12.13□□□□□ -0.47
UPF1-202ENST00000594243 MNDAP41218 407 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 GNG10P50151 68 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 RAB13P51153 203 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 LOXL3P58215 753 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 MXD1Q05195 221 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 LY6EQ16553 131 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 DHRS7BQ6IAN0 325 aaPredicted RBP12.13□□□□□ -0.47
UPF1-202ENST00000594243 CCDC144NLQ6NUI1 221 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 SFXN4Q6P4A7 337 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 C3orf56Q8N813 242 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 C8orf31Q8N9H6 132 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 OR4F5Q8NH21 305 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 PIFOQ8TCI5 191 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 LEAP2Q969E1 77 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 GALMQ96C23 342 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 ARHGAP5-AS1Q96IT6 56 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 PECRQ9BY49 303 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 RNF167Q9H6Y7 350 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 BEX1Q9HBH7 125 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 ABRACLQ9P1F3 81 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 AK3Q9UIJ7 227 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 DAPK2Q9UIK4 370 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 MGAT4AQ9UM21 535 aa12.13□□□□□ -0.47
UPF1-202ENST00000594243 LY6LH3BQJ8 138 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 NAPSAO96009 420 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 EFNB2P52799 333 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 RAG2P55895 527 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 MRPS15P82914 257 aaKnown RBP12.12□□□□□ -0.47
UPF1-202ENST00000594243 HTD2P86397 168 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 PLA2G7Q13093 441 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 UTF1Q5T230 341 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 TPTE2P1Q5T6R2 138 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 CROCCP3Q8IVE0 287 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 DTX3Q8N9I9 347 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 OR10R2Q8NGX6 335 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 OR10X1Q8NGY0 326 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 OR1L1Q8NH94 360 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 UBALD1Q8TB05 177 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 RPEQ96AT9 228 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 RAB3CQ96E17 227 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 ATG5Q9H1Y0 275 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 GNG12Q9UBI6 72 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 TCF19Q9Y242 345 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 MMP24Q9Y5R2 645 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 ANK2Q01484 3957 aa12.12□□□□□ -0.47
UPF1-202ENST00000594243 TRBV6-6A0A0A6YYG2 114 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 IGHV3-43A0A0B4J1X8 118 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 A0A0B4J203 849 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 IGHV3-43DP0DP04 118 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 RAB7AP51149 207 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 SCAND1P57086 179 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 MADCAM1Q13477 382 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 ARL6IP1Q15041 203 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 PLAC9Q5JTB6 97 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 STEAP3Q658P3 488 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 ZNF880Q6PDB4 577 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 MOB1BQ7L9L4 216 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms