RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 SLC31A2O15432 143 aa13.67□□□□□ -0.22
CLK3-221ENST00000568139 OR7C1O76099 320 aaPredicted RBP13.67□□□□□ -0.22
CLK3-221ENST00000568139 CDRT1O95170 752 aa13.67□□□□□ -0.22
CLK3-221ENST00000568139 LYL1P12980 280 aa13.67□□□□□ -0.22
CLK3-221ENST00000568139 MRPL28Q13084 256 aaKnown RBP13.67□□□□□ -0.22
CLK3-221ENST00000568139 FAM27D1Q5T7N8 215 aa13.67□□□□□ -0.22
CLK3-221ENST00000568139 LINC00596Q86U02 117 aa13.67□□□□□ -0.22
CLK3-221ENST00000568139 ZNF439Q8NDP4 499 aa13.67□□□□□ -0.22
CLK3-221ENST00000568139 OR52N1Q8NH53 320 aa13.67□□□□□ -0.22
CLK3-221ENST00000568139 CCDC107Q8WV48 283 aa13.67□□□□□ -0.22
CLK3-221ENST00000568139 TSEN15Q8WW01 171 aaKnown RBP13.67□□□□□ -0.22
CLK3-221ENST00000568139 METTL9Q9H1A3 318 aa13.67□□□□□ -0.22
CLK3-221ENST00000568139 ZNF107Q9UII5 783 aaPredicted RBP13.67□□□□□ -0.22
CLK3-221ENST00000568139 VSIG4Q9Y279 399 aa13.67□□□□□ -0.22
CLK3-221ENST00000568139 LCE6AA0A183 80 aa13.66□□□□□ -0.22
CLK3-221ENST00000568139 GEMIN2O14893 280 aaKnown RBP13.66□□□□□ -0.22
CLK3-221ENST00000568139 IGLV1-40P01703 118 aa13.66□□□□□ -0.22
CLK3-221ENST00000568139 MT-ND4P03905 459 aa13.66□□□□□ -0.22
CLK3-221ENST00000568139 ZNF134P52741 427 aa13.66□□□□□ -0.22
CLK3-221ENST00000568139 GNB1P62873 340 aa13.66□□□□□ -0.22
CLK3-221ENST00000568139 TMEM65Q6PI78 240 aa13.66□□□□□ -0.22
CLK3-221ENST00000568139 ZNF497Q6ZNH5 498 aa13.66□□□□□ -0.22
CLK3-221ENST00000568139 OVCH2Q7RTZ1 564 aa13.66□□□□□ -0.22
CLK3-221ENST00000568139 DCUN1D4Q92564 292 aa13.66□□□□□ -0.22
CLK3-221ENST00000568139 JAM3Q9BX67 310 aa13.66□□□□□ -0.22
CLK3-221ENST00000568139 TAS2R4Q9NYW5 299 aa13.66□□□□□ -0.22
CLK3-221ENST00000568139 ING4Q9UNL4 249 aa13.66□□□□□ -0.22
CLK3-221ENST00000568139 FAM90A10PA6NDY2 464 aa13.65□□□□□ -0.22
CLK3-221ENST00000568139 SNTNA6NMZ2 147 aa13.65□□□□□ -0.22
CLK3-221ENST00000568139 FRMD6-AS1P0C7T7 363 aa13.65□□□□□ -0.22
CLK3-221ENST00000568139 MPV17LQ2QL34 196 aa13.65□□□□□ -0.22
CLK3-221ENST00000568139 CT45A1Q5HYN5 189 aa13.65□□□□□ -0.22
CLK3-221ENST00000568139 CT45A3Q8NHU0 189 aa13.65□□□□□ -0.22
CLK3-221ENST00000568139 ISYNA1Q9NPH2 558 aa13.65□□□□□ -0.22
CLK3-221ENST00000568139 CHCHD3Q9NX63 227 aaKnown RBP13.65□□□□□ -0.22
CLK3-221ENST00000568139 GAR1Q9NY12 217 aaKnown RBP13.65□□□□□ -0.22
CLK3-221ENST00000568139 AASSQ9UDR5 926 aa13.65□□□□□ -0.22
CLK3-221ENST00000568139 SAC3D1A6NKF1 404 aa13.64□□□□□ -0.23
CLK3-221ENST00000568139 G3V318 75 aa13.64□□□□□ -0.23
CLK3-221ENST00000568139 AIPO00170 330 aa13.64□□□□□ -0.23
CLK3-221ENST00000568139 OVOL1O14753 267 aa13.64□□□□□ -0.23
CLK3-221ENST00000568139 CSTBP04080 98 aaKnown RBP13.64□□□□□ -0.23
CLK3-221ENST00000568139 SLC2A2P11168 524 aaPredicted RBP13.64□□□□□ -0.23
CLK3-221ENST00000568139 SOX2P48431 317 aa13.64□□□□□ -0.23
CLK3-221ENST00000568139 ATAD3CQ5T2N8 411 aa13.64□□□□□ -0.23
CLK3-221ENST00000568139 RGP1Q92546 391 aaPredicted RBP13.64□□□□□ -0.23
CLK3-221ENST00000568139 CITED4Q96RK1 184 aa13.64□□□□□ -0.23
CLK3-221ENST00000568139 ZMAT4Q9H898 229 aa13.64□□□□□ -0.23
CLK3-221ENST00000568139 ERVK13-1Q9NX77 482 aa13.64□□□□□ -0.23
CLK3-221ENST00000568139 WSB1Q9Y6I7 421 aa13.64□□□□□ -0.23
CLK3-221ENST00000568139 SACSQ9NZJ4 4579 aa13.64□□□□□ -0.23
CLK3-221ENST00000568139 C12orf77C9JDV5 145 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 LANCL1O43813 399 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 ALPLP05186 524 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 SPNP16150 400 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 GABRB1P18505 474 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 MYF6P23409 242 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 RAB9AP51151 201 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 GBX2P52951 348 aaPredicted RBP13.63□□□□□ -0.23
CLK3-221ENST00000568139 LSAMPQ13449 338 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 MMDQ15546 238 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 TMEM30BQ3MIR4 351 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 STEAP3Q658P3 488 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 OR5B12Q96R08 314 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 OR51J1Q9H342 316 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 PALMDQ9NP74 551 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 TMEM138Q9NPI0 162 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 PAK1IP1Q9NWT1 392 aaPredicted RBP13.63□□□□□ -0.23
CLK3-221ENST00000568139 GNG12Q9UBI6 72 aa13.63□□□□□ -0.23
CLK3-221ENST00000568139 ATP6V0E1O15342 81 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 SPINT2O43291 252 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 SAP30O75446 220 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 FADS2O95864 444 aaKnown RBP13.62□□□□□ -0.23
CLK3-221ENST00000568139 HLA-DRB1P01911 266 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 GP9P14770 177 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 SERPINA2P20848 420 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 ZNF93P35789 620 aaPredicted RBP13.62□□□□□ -0.23
CLK3-221ENST00000568139 GTF2A1P52655 376 aaPredicted RBP13.62□□□□□ -0.23
CLK3-221ENST00000568139 DOC2BQ14184 412 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 SYT6Q5T7P8 510 aaPredicted RBP13.62□□□□□ -0.23
CLK3-221ENST00000568139 C1orf146Q5VVC0 180 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 STX19Q8N4C7 294 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 MINDY2Q8NBR6 621 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 GPR148Q8TDV2 347 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 NEK7Q8TDX7 302 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 DLX4Q92988 240 aaPredicted RBP13.62□□□□□ -0.23
CLK3-221ENST00000568139 RAB9BQ9NP90 201 aa13.62□□□□□ -0.23
CLK3-221ENST00000568139 IGHV7-81A0A0B4J1V7 117 aa13.61□□□□□ -0.23
CLK3-221ENST00000568139 TRAV41A0A0B4J266 112 aa13.61□□□□□ -0.23
CLK3-221ENST00000568139 A0A1W2PP11 408 aa13.61□□□□□ -0.23
CLK3-221ENST00000568139 ZNF780AO75290 641 aaPredicted RBP13.61□□□□□ -0.23
CLK3-221ENST00000568139 CD2P06729 351 aa13.61□□□□□ -0.23
CLK3-221ENST00000568139 ZIK1Q3SY52 487 aaPredicted RBP13.61□□□□□ -0.23
CLK3-221ENST00000568139 DDI2Q5TDH0 399 aa13.61□□□□□ -0.23
CLK3-221ENST00000568139 OR10V1Q8NGI7 309 aa13.61□□□□□ -0.23
CLK3-221ENST00000568139 TMEM106AQ96A25 262 aa13.61□□□□□ -0.23
CLK3-221ENST00000568139 RITA1Q96K30 269 aa13.61□□□□□ -0.23
CLK3-221ENST00000568139 S100A13Q99584 98 aa13.61□□□□□ -0.23
CLK3-221ENST00000568139 TPSG1Q9NRR2 321 aa13.61□□□□□ -0.23
CLK3-221ENST00000568139 RCC2Q9P258 522 aaKnown RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms